Basic Information

Insect: Leptopterna dolabrata
Gene Symbol: -
Assembly: GCA_954871275.1
Location: OX940977.1:18868373-18882385[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 4.6 1.5e+03 2.1 0.0 9 21 406 418 404 419 0.84

2 13 3e-05 0.0097 18.4 0.5 1 23 444 466 444 466 0.98

3 13 0.0031 0.99 12.1 0.5 1 23 472 494 472 494 0.97

4 13 0.00059 0.19 14.3 5.7 1 23 500 522 500 522 0.98

5 13 0.00048 0.15 14.6 2.0 1 23 528 550 528 550 0.97

6 13 0.01 3.2 10.5 2.8 1 23 556 578 556 578 0.97

7 13 9e-07 0.00028 23.2 1.4 1 23 584 606 584 606 0.99

8 13 0.00018 0.057 16.0 2.8 1 23 612 634 612 634 0.98

9 13 1.5e-05 0.0049 19.3 2.1 1 23 640 662 640 662 0.98

10 13 0.00037 0.12 15.0 0.5 1 23 668 690 668 690 0.98

11 13 0.0012 0.38 13.4 0.5 1 23 696 718 696 718 0.96

12 13 0.16 52 6.6 3.2 1 23 724 746 724 746 0.97

13 13 0.078 25 7.7 1.3 1 23 752 775 752 775 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	4.6	1.5e+03	2.1	0.0	9	21	406	418	404	419	0.84
2	13	3e-05	0.0097	18.4	0.5	1	23	444	466	444	466	0.98
3	13	0.0031	0.99	12.1	0.5	1	23	472	494	472	494	0.97
4	13	0.00059	0.19	14.3	5.7	1	23	500	522	500	522	0.98
5	13	0.00048	0.15	14.6	2.0	1	23	528	550	528	550	0.97
6	13	0.01	3.2	10.5	2.8	1	23	556	578	556	578	0.97
7	13	9e-07	0.00028	23.2	1.4	1	23	584	606	584	606	0.99
8	13	0.00018	0.057	16.0	2.8	1	23	612	634	612	634	0.98
9	13	1.5e-05	0.0049	19.3	2.1	1	23	640	662	640	662	0.98
10	13	0.00037	0.12	15.0	0.5	1	23	668	690	668	690	0.98
11	13	0.0012	0.38	13.4	0.5	1	23	696	718	696	718	0.96
12	13	0.16	52	6.6	3.2	1	23	724	746	724	746	0.97
13	13	0.078	25	7.7	1.3	1	23	752	775	752	775	0.92

Sequence Information

Coding Sequence: aTGGCTGATCCATCTGCAGTTCAGACGTCTAACGTCCCTCCAGTAATTCTTAAAGAAAAGATAAAAACTGAACCACAAGATGTATCCAGTGAGCAGCAGGAAGCCGCAAGTAACCCTACAGTAAAACAAGAGCCAAAAAATACGTTTGAAGATGAACGAGGCGTTAAACGAGAAGTAATAAAGACTGAGCTTCTGGAAGATAATTCCAAGCCACCAGAAATCAAAACGGAAAATGGTGATGGTAGAAATGAAACGAATCAAATTAAATCTGAGCCTAAAGGGGAACATGAGGGAAAACCTCTAATTTTTGTAAATGACCCTGTTGATGTCAGTGCTGATGAAATTGTTTTGAAAAGTGAACTGATTATTGAAAGTACGTCTTCATTGAGCGTTCATGGGACAACTGCTGACAAACTTCAGAACGTGGATGGCATTTTACAGACTCAGTTACAAATCAAGGTGGAAGTTGGGGTTACTGCTGTGAAAGTAGAAGTTGCTGATATAAATCTTGAAAAGatcgaaaatgaagcaaAATCAATTGAAAGCATTGGCATCGCTGGTTCCCTCCATGAGGCAGAGCAAAACACAAGAGGTTCTGAGCGGCCTCGGAGGACATGCAAGCGTATTGACTACTCAGTGTTCAGTGAGTGCGGAAGAGACGAGAACGTTCAACAGCTGGCGCGTGACTTCAAGAAAAAAGGAGTAAGAAGAAGACTGGAATCCGCACCCAAAGCAATGTGTATAAATCCTAAATGGAGAGCTAGGAATGAAGCTAAGGCCAAATGTCTTGACGGTACTAGTGTAAAAGAAGCTGAAAACATGGCCATATCGAAAGTTGAAGTTCCCGGAGATCATCCTGCTGTCTGGGTCAACGTTAAAGAGGAAAAACAAGATGGAGTAGAAAACGCTACAGATATGGAGAGTGAAGACACAGATGAAGAAAGAAACCAAGCGAACGATCCGGACTGGCAAATCGATGATATAAATGATGGCATGGAGCTTGTGAGGAATATAAACGAAATGTTGTCATCCAAGTTCATCAAAACTGAAGTAGATGTTTTGGAGCCATCAAGAGGCATAAGAGGACGCCGGAAAAGAAGACTGTTGGAACCCGATGAACTAGTCAAGGAACTCTTGGACGGCCAAGTCTTATCATCGGAACAGTCTGAGCTTCTGGAAGTGCTCAGAAGCAGAATGGACTTTTCTAAACCAACCACGCTGAGTTACTGGGATGGACTTACACGCCACATGTGCTTGGTTTGTGCGTACAAAACCCACGTTCCTGCCCACATGGTCAAACATGTTAGATGCCACACAGGCGAAAAACCCTACGCATGTCCTGACTGCGATTATAGGTGCGCAGAAAGCAGTTCACTTGCTACTCATAGGAGAATTCACACTGGGGAAAAACCCTACGCATGTCCCCATTGTGATTACAGAACCAACGGCTCATCAATTCTCAAGACGCACATTATGATCCATACAGGAAAAAAGCCGTTCAGTTGTCCGCATTGTGACTTCAAATGCAGGGAACACGGAGGTCTAAAAAGGCATATCCGCATTCACACTGGAGAAAAGCCGTTTGCCTGCCCCCATTGTGATTACCGAGGTCCTAGCAGCACCTGTTTGAAAAGTCACATGATGGTTCACACAAAGGAAAAACCTCATGTGTGCAGCTACTGTGGGTATGCAACGGGCTGTTCAAGCTCCCTGACAATACATCTCCGAAGACATACTGGTGAAAAGCCGTACAGCTGTAGCGTGTGCAAATATAAATTTGTTTCATCGGGGACTTTGAAAGTTCACATGAGAACTCATACAGGCGAAAAACCGTATATGTGTAAGATTTGTGGCTATAAATGTGCAACACAAGGAAGGTTCAAATCACACTTGAGAATTCACTCTGGGGATAAGAAACACGAGTGCCCGTTTTGTGATTACAAATCAGTGAGATCGGATAACCTCAAAATGCATCTTAGAACCCACACCGGCGAGAGGCCGTACCCCTGTCCTCACTGCGAATATCGCTCTTCCGAAAAAGCGCGGTTGATTCAACACATCCGCATTCACACCGGAGAGAAACCCTACGTCTGCAGCATGTGCGGGTTCAGGACATCGGACAAGAACGGGCTGAGGTCTCACTCGAGCGTCCATTCAACAGATAAACCCTTTTGCTGCTCATACTGTGACTTCAAGACGGCCCGCCGTGGGATACTGAAAACCCATGTCATGCGGCACACCGGCACAAGACCCTACGCTTGTCCTTATTGCTCGTACAAGTCCACAAAATCATGCGCTTTGAAAGGACATGTTGCTAATAACCACAATGGCAATAAAAAGTAA
Protein Sequence: MADPSAVQTSNVPPVILKEKIKTEPQDVSSEQQEAASNPTVKQEPKNTFEDERGVKREVIKTELLEDNSKPPEIKTENGDGRNETNQIKSEPKGEHEGKPLIFVNDPVDVSADEIVLKSELIIESTSSLSVHGTTADKLQNVDGILQTQLQIKVEVGVTAVKVEVADINLEKIENEAKSIESIGIAGSLHEAEQNTRGSERPRRTCKRIDYSVFSECGRDENVQQLARDFKKKGVRRRLESAPKAMCINPKWRARNEAKAKCLDGTSVKEAENMAISKVEVPGDHPAVWVNVKEEKQDGVENATDMESEDTDEERNQANDPDWQIDDINDGMELVRNINEMLSSKFIKTEVDVLEPSRGIRGRRKRRLLEPDELVKELLDGQVLSSEQSELLEVLRSRMDFSKPTTLSYWDGLTRHMCLVCAYKTHVPAHMVKHVRCHTGEKPYACPDCDYRCAESSSLATHRRIHTGEKPYACPHCDYRTNGSSILKTHIMIHTGKKPFSCPHCDFKCREHGGLKRHIRIHTGEKPFACPHCDYRGPSSTCLKSHMMVHTKEKPHVCSYCGYATGCSSSLTIHLRRHTGEKPYSCSVCKYKFVSSGTLKVHMRTHTGEKPYMCKICGYKCATQGRFKSHLRIHSGDKKHECPFCDYKSVRSDNLKMHLRTHTGERPYPCPHCEYRSSEKARLIQHIRIHTGEKPYVCSMCGFRTSDKNGLRSHSSVHSTDKPFCCSYCDFKTARRGILKTHVMRHTGTRPYACPYCSYKSTKSCALKGHVANNHNGNKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -