Ldol073758.1
Basic Information
- Insect
- Leptopterna dolabrata
- Gene Symbol
- ZNF296
- Assembly
- GCA_954871275.1
- Location
- OX940989.1:19793699-19808410[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0009 0.28 13.8 1.9 1 21 205 225 205 226 0.96 2 12 0.00014 0.045 16.3 0.6 3 23 247 267 246 267 0.99 3 12 3.9e-06 0.0012 21.2 0.7 3 23 275 296 273 296 0.96 4 12 0.00037 0.12 15.0 0.7 2 23 305 326 304 326 0.92 5 12 0.042 13 8.5 3.0 1 20 333 352 333 354 0.94 6 12 0.038 12 8.6 0.1 2 23 383 404 382 404 0.95 7 12 0.0065 2.1 11.1 0.1 2 23 409 431 408 431 0.96 8 12 0.00016 0.051 16.1 2.0 2 23 437 458 436 458 0.96 9 12 0.0019 0.62 12.7 0.6 1 23 464 486 464 486 0.92 10 12 7.9e-05 0.025 17.1 0.2 1 23 492 514 492 514 0.96 11 12 0.0018 0.58 12.8 5.0 2 23 520 541 519 541 0.98 12 12 0.00057 0.18 14.4 0.4 2 21 549 568 548 569 0.93
Sequence Information
- Coding Sequence
- ATGGAGTCGCCAGACGAGTTCAGGATGGACGACTCCGACGGGTTTTCTGACACCGAAGACGACCCTGACGTTCCGAGAGACCTTCCAGCCCCCCTTCACATGAAAAACCCGACGATAGGAGCAGTGTGGGAACCTTGCAGAGCCCGAATACTTCACAATAGAAGGTGGCTCGGATCCGGGACGGCCGCATGGCTGGCGAATACGCTGGTGTCCCGGATCCGGGACAGCCGCACTGAATGTGTTAAGGGAATGGAAATCAAGGGACCAGATGAAGAGTAtagagcagtaactaaaatggggaAATGCGGAGTGACGCTTGCGCAGTTGAAGACGAGGATCAAAGAGGAAATCGTTGAGAATGGCGAAGAAGCGCTGGCCAACGGTACCATCGCCGGCGTTTTAAAGGAAGACGAGGTGAGGAAGGAGAAGGCGAACTCCGAGGAAGGCGAGGAGGACGACGATGACTCGGATGACGATGACAGTAAAGacgatgaggaggatgaacaacaGGATGAACTTGAATTTAAAGTGGCCAACTTCCTAGCAGACACGTCGGTAATTCGTCGCCGATCAAAAAAGTGTAAAAATGGCTCGATTAAATCTGCTTGCAAATTCAAGTGTAACCAATGTTCAGCGCTTTTCCGATACAAGTCTACGTTGACCTATCACATGAAGTCCGAATGTGGCACTGGGGTCATCACCGCGGGTTCCAAGGTCGTCCGCAACTCCCCGGCCCTTTGcaacatctgtaataagcagcTTTCTTCCAGAACCTCCCTGATGGTTCATCTCCGTATACATACGGGTGAGCGGCCGTTCGGTTGTTCCGAGTGTGGCCAGAGCTTCTCCCAGAACGCGCATCTCAAAGATCACATCGCCCGCCTCCACTCGCAAGGACCCGATCAGCTGTTTCTCTGCAGGGCGTGCAACACGACATTCTCAGACAGGGCGACTTTGAGGACTCACATGGAAGAACACGTTGGGCAACAACGCCCCTTCCAGTGTCAGATTTGCCGGAAGAGGTATCAGACGCAAGAAAGGCTGGCGTCCCACGTATGTCACGGAAAGAGCGTCGGAGACGTCCAGGGATCAGGAAGCGGGGAGGTGGCGCCCCCCGGGTTGTCCTTGGGCAGCAAAAGGGGCCTAACCTGCACCGCTTGCGGGTACCTGGCAGCCACAAGGTCCGACCTGAGGGAACACTTGGCCCGCCATCCGCTCCCCGTGACGTGCCCCGAGTGCGCGGAAAAGTTCGATTCCCTTGCGGCTTGGAGAAAACACAACCGTCGTTACCACAGGTCGAAACTCTGCAAATGTTCCTTTTGCGGGCGAACTTTCCCGTCTGAGTACGATGTCAGAGTCCACGAGAGATCTCATACTGGTGAGCGGCCTTACAGATGCACGTTCTGCGGcagGGGATTCGCGCGTAAATCGATACTAGACGTTCACACGACACTCCATACCGGGCGGCGGGACTACGTGTGTTCCGATTGCGGCTCGGCTTTCAACAGGAAAAGCAAGCTGGACGTACACCGGGCTGAACACACTGATACCCATGTCCAGTGCCAGACGTGtcagaaaaccttcaaatgcAAAGCCTATCTCACGACTCACCTCAAAACCCACGAAAGGGACTCGTCGAGCGTGTCGTGCGCAGACTGCAGCCGCTCCTTCACTTCCCGCCGCGGCCTCCGATCGCACCTGTCGAAAGGAGCTTGCCCCTCCACAGCTGCGGCATCCCCGCAGTCCAACGTGCCCCCGACCACTCCGACCCGCCTGCTCAGTCCTCCAATCCCTCTCCCGCTCCTCGCAACAGCTCCGACATTGCTCCCGCTAATCGTATCACCTCTGTTCATGTCCAAACTTGGACACCCACCGGCTGATCCTAAACAGATCAGTTAA
- Protein Sequence
- MESPDEFRMDDSDGFSDTEDDPDVPRDLPAPLHMKNPTIGAVWEPCRARILHNRRWLGSGTAAWLANTLVSRIRDSRTECVKGMEIKGPDEEYRAVTKMGKCGVTLAQLKTRIKEEIVENGEEALANGTIAGVLKEDEVRKEKANSEEGEEDDDDSDDDDSKDDEEDEQQDELEFKVANFLADTSVIRRRSKKCKNGSIKSACKFKCNQCSALFRYKSTLTYHMKSECGTGVITAGSKVVRNSPALCNICNKQLSSRTSLMVHLRIHTGERPFGCSECGQSFSQNAHLKDHIARLHSQGPDQLFLCRACNTTFSDRATLRTHMEEHVGQQRPFQCQICRKRYQTQERLASHVCHGKSVGDVQGSGSGEVAPPGLSLGSKRGLTCTACGYLAATRSDLREHLARHPLPVTCPECAEKFDSLAAWRKHNRRYHRSKLCKCSFCGRTFPSEYDVRVHERSHTGERPYRCTFCGRGFARKSILDVHTTLHTGRRDYVCSDCGSAFNRKSKLDVHRAEHTDTHVQCQTCQKTFKCKAYLTTHLKTHERDSSSVSCADCSRSFTSRRGLRSHLSKGACPSTAAASPQSNVPPTTPTRLLSPPIPLPLLATAPTLLPLIVSPLFMSKLGHPPADPKQIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00386627;
- 90% Identity
- -
- 80% Identity
- -