Basic Information

Insect: Leptopterna dolabrata
Gene Symbol: -
Assembly: GCA_954871275.1
Location: OX940986.1:18724331-18725824[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.2 64 6.4 1.4 2 23 88 109 87 109 0.97

2 12 5.9e-05 0.019 17.5 3.1 1 23 115 137 115 137 0.99

3 12 9.4e-07 0.0003 23.1 1.2 1 23 143 165 143 165 0.98

4 12 8.5e-05 0.027 17.0 0.9 1 23 171 193 171 193 0.98

5 12 0.0015 0.46 13.1 0.9 1 23 199 221 199 221 0.98

6 12 5.1e-05 0.016 17.7 5.8 1 23 227 249 227 249 0.99

7 12 0.0024 0.75 12.4 2.4 2 20 256 274 255 277 0.96

8 12 0.11 36 7.2 1.4 1 23 283 305 283 305 0.96

9 12 0.00035 0.11 15.1 2.9 1 23 311 333 311 333 0.97

10 12 3.7e-06 0.0012 21.3 2.3 2 23 340 361 339 361 0.97

11 12 0.00011 0.036 16.6 6.2 1 23 367 389 367 389 0.99

12 12 2e-06 0.00064 22.1 1.1 1 23 395 417 395 417 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.2	64	6.4	1.4	2	23	88	109	87	109	0.97
2	12	5.9e-05	0.019	17.5	3.1	1	23	115	137	115	137	0.99
3	12	9.4e-07	0.0003	23.1	1.2	1	23	143	165	143	165	0.98
4	12	8.5e-05	0.027	17.0	0.9	1	23	171	193	171	193	0.98
5	12	0.0015	0.46	13.1	0.9	1	23	199	221	199	221	0.98
6	12	5.1e-05	0.016	17.7	5.8	1	23	227	249	227	249	0.99
7	12	0.0024	0.75	12.4	2.4	2	20	256	274	255	277	0.96
8	12	0.11	36	7.2	1.4	1	23	283	305	283	305	0.96
9	12	0.00035	0.11	15.1	2.9	1	23	311	333	311	333	0.97
10	12	3.7e-06	0.0012	21.3	2.3	2	23	340	361	339	361	0.97
11	12	0.00011	0.036	16.6	6.2	1	23	367	389	367	389	0.99
12	12	2e-06	0.00064	22.1	1.1	1	23	395	417	395	417	0.98

Sequence Information

Coding Sequence: atggaaaagatCAAAATCGAAGAAGAGAGTGTGTGTGAAGATGAATATTTGGAGGAATGTGAGGAAAGAAGTATTGACGCTGATGCGTCGGAAAAACACGAAACTTTGGATGACAAGAAGGAGTTACGGAGGAGTTTGAGGAGTGTGAAAAAACCACGTCTCACTGAACACTTTGAAGATTCTCCTGAAATTCCAGAAGCGTATACAGAAGAATGTCAAGAGCCTAATGATGCTCCATGGAAACGCCAAGGCAAGATGCTGAAATGCTCTTTGTGTGTATTCAAGTGTCCCCGCCCTGAGAAGATGGAAGAGCACTTCCGGATACATACAGGGGAAAGACCGTATCAGTGCACCGAATGTGAGTATGCCTGTGCCAAAGAATGCAATCTCAAGGTTCACATGAGAATCCACACAAATGAAAAGCCGTTTTCATGTCCAATATGTCCTTATAAATCGAGCCATTCTGGGTCGCTCAAAGTCCATATGCGAACTCATACAGGGGAGAAACCTTACAGTTGCACATACTGTCCTTACAAGTCAGCATATTCCAACCAGCTTAGGGCCCATACCAGGATTCATACTGGGGACAAACCTTACCACTGTGGATTATGTGGTTACCGTGGGAGCAACACCGTACGACTCAGGGAGCATATGCGGGTTCATACCGGAGAGAAACCTTTTCAGTGCAACTCTTGTGATTATTCCTGTGCACAAAAGCACAGTTTGAAGTCTCATATGAAAGTCCATTCTGAAGACAAGATGCAAAAGTGTAAGGAGTGTAGTTTTACATGTGTATCTGCCAGTCAACTTAAAACCCATATGTGGGACCACATGGGAATCAAACCATTTGCATGTTCAGAATGTGATTTCTCATGTCTACAACCAAAAGCAATGCAACAGCACTATTCCATGCATTCAGGCAATCGACCTTTTGCATGTTCATTGTGCTCGTTCACATTCAAGAAGAtgtcaactttaaaaaaacacaCTGAAACGCACTTGTTAGATAAGCCGATGGTGTGCAATGAATGTGATTATCGGTGCATCCGTAAAAGTGATCTCAAGTCTCATATGAGACTCCATACTGGGGAGAAACCGTACACTTGCAAATACTGCGGCTACAAGTGTGCCCACAACTCCAGGATGAAAGTCCATATCCGCACGCACACTGGGGAACGACCTTACAACTGTCCGCAGTGCGGGTACTCCTGCATTCAATCGAGCAGGCTTGCTGCACACATGAAAACGCACACTGAAGAACAGCTGCAGGAAACTCTCAACAATGCAGACACATATGCGCCGTCCCTCTCTGACCCGGAATCCTTGGTAAACGCTCTGCACACAATTCCTGACGACCATCCTGACTCCCCTGTCGGAGTTCCCCAACCGTTACCGAAACTTGAGCCTCCAGATGACCCAGAATATATCCATCCAAGTATAGTATCCATCCAAGGCCTTGGAGCTCTAGATCTCACCATTTCAAAGATTTCTTAA
Protein Sequence: MEKIKIEEESVCEDEYLEECEERSIDADASEKHETLDDKKELRRSLRSVKKPRLTEHFEDSPEIPEAYTEECQEPNDAPWKRQGKMLKCSLCVFKCPRPEKMEEHFRIHTGERPYQCTECEYACAKECNLKVHMRIHTNEKPFSCPICPYKSSHSGSLKVHMRTHTGEKPYSCTYCPYKSAYSNQLRAHTRIHTGDKPYHCGLCGYRGSNTVRLREHMRVHTGEKPFQCNSCDYSCAQKHSLKSHMKVHSEDKMQKCKECSFTCVSASQLKTHMWDHMGIKPFACSECDFSCLQPKAMQQHYSMHSGNRPFACSLCSFTFKKMSTLKKHTETHLLDKPMVCNECDYRCIRKSDLKSHMRLHTGEKPYTCKYCGYKCAHNSRMKVHIRTHTGERPYNCPQCGYSCIQSSRLAAHMKTHTEEQLQETLNNADTYAPSLSDPESLVNALHTIPDDHPDSPVGVPQPLPKLEPPDDPEYIHPSIVSIQGLGALDLTISKIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00930633;
90% Identity: -
80% Identity: -