Ldol068472.1
Basic Information
- Insect
- Leptopterna dolabrata
- Gene Symbol
- -
- Assembly
- GCA_954871275.1
- Location
- OX940987.1:6946965-7028481[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00029 0.093 15.3 0.7 1 23 115 138 115 138 0.90 2 13 0.046 15 8.4 0.3 1 23 144 166 144 166 0.96 3 13 1.1e-05 0.0034 19.8 0.0 1 23 172 194 172 194 0.99 4 13 0.0015 0.48 13.0 0.1 1 23 201 223 201 223 0.97 5 13 0.00082 0.26 13.9 0.8 1 23 359 381 359 381 0.97 6 13 0.00012 0.039 16.5 0.3 1 23 387 409 387 409 0.98 7 13 0.0036 1.1 11.9 0.1 1 23 415 437 415 437 0.96 8 13 2.4e-05 0.0075 18.7 2.5 1 23 443 465 443 465 0.98 9 13 1.1e-05 0.0034 19.8 0.3 1 23 585 607 585 607 0.97 10 13 6.9e-06 0.0022 20.4 0.1 1 23 613 635 613 635 0.99 11 13 0.00039 0.12 14.9 3.6 1 23 641 663 641 663 0.98 12 13 0.0013 0.42 13.2 7.2 1 23 669 691 669 691 0.98 13 13 2.1e-07 6.7e-05 25.2 0.6 1 23 842 864 842 864 0.99
Sequence Information
- Coding Sequence
- ATGGATTGCAGCGAATCAAATGTGTCGAATTGGGAACGTCTCGGTTCTGATGTTGTTGTGAAACATGAACCAATCACAAATGCTGGAGGAATTGAGCCAATCACCATTAAGCGTGAGGAAACGTATGGATCTGAAGAAGAACCTCGACTCCCAGATACTGACATTGATCAATATCACCACGTAACCATGGCCAATGAAATTCCCGATGTTGAATTGCAAATTGGGGAACCTGTGATTCTGAAGGAGGAACCCATAACGGACAGCGATTCCTCGATGGATGTGGACCCATTGCTTAAGCCTGACCCTGATGAAGCTCCATCCACTAGCTCAGGTGAGAAGCCTTTTGCTTGTGGTCTGTGCGATTATAAATGCAGCCAGAAGAGCAGTCTGAAAGTTCATATTGTGGGAGTTCACACAGGTGAGAAGCCTTTTGCTTGCAGTCTCTGCGATTATAAAGGCAACTGGAAGTCCTATCTGAAAAGTCATATGGCAATTCACACAGgggagaaaccTTTCACTTGTGACATTTGTGGACTCGGTCTCATAAGTAATTCCGATTTGGCTCTCCATATGAGAACTCACACAGGGGGGGATAAGACCTTTGCTTGTGATATCTGTGACTACGCTACCGGCGTCCTTAAATACTTGAAGAAACACATGATATCGCATTCCGGGTTTTTCAGAACTTCGATGTCCAGGAGGTCAAGAGTCACGACCTGTTTCAAGGGTAAATATaaacagttggcttctcgcTCTAAGGTGGGCCCAATGTATTTATTTGATGGGAAGGCGGAAGGATGGGTCCGTCGAGCCCAGGACGCGTCAAAGACGGCCAAAATGGTTTACAGACCACGTCAAAACACGTCCGCTGGACGTTTTGAGCCCCATCTGCCACTCACCCTACATCTTTGGGTTACAAGAAGCCAGCTCAGACTTCGGGAAACGGGCAGCGGCCCGCAGCCGGGAAACCCCAGCCAAAAGCTGCATTTCGGGACCAGCCGCAGGGGAAACGAGGGAACTACACTTACAACCGCAATCACCCTCACCACAACAATTAACCCAGGGGAGAAGCCCTTTGCTTGTAATATCTGTGACTATGCTACCGTCCTCCttaaaaacttgaagaaacacAAGAAATCGCATTCCGATGAAAAGCAATACGCTTGTGCCATCTGCGATTTCAGAACAGTCCAGTATTCGAGCCTGCTTCGACACATAAACACACACACCTtggaaaaatcTTTCGCTTGCGACAGCTGCGATTTCAAAAGCGTCAATTGGTCGGAACTTCTCAAACACGTGGTTACCCATACAGGTGAAAAACCATACAAATGCAATGACTGTGACTATGCCACTACCCGAAAGTGTAATCTGCTGAGGCACGTGATATCACATGAAGGCTCAGATATGGATTGCAGCGAGTCAAATATATCTAACTGGGAAGAACTCGGTTCTGATGTTGTTGTGAAACATGAACCATTCGCAAATGCTGAAGGAATTGAGCCAATCACCATTAAGCACGAGGAAACGTATTATGATTGTAAAGATGATACTCGACTACCAGATACTGACATCGATCAAAATCACCACATAACCAAGGCCGATGAAATCCAAGATGTTGAATTACAAATTGAGGAACCTGTGATTCTGAAGGAGGAACCCGTAACAGACAGCGATTCCTCGATAGATGTGGACCCATTGCTTAAGCCTGACCCTGATGAAGCTCCATCCACTAGCTCAGAGAAGAAACAGTTCGCTTGTGACATTTGCGGACATAGTGTCAGTCGTAAGTCAGAGGTGGCTGTTCATATGAGAAGTCACACAGGGGAGAAACCGTTCACTTGTGACATTTGCGGACTCGGTCTCATAAGTAATTCCGATTTGAGTGTCCATATGAGAACTCACACAGGCGAGAGGCCTTTCTCATGTGATCACTGCGATTACAAGGCGACTAAGAAGTCGTACCTGATCAGCCACCAAAAAATGCACACCGGTGAAAAACCATACAAATGCCATTACTGTGACTATGCCACAGCCCAAAAGTGTCATCTGCTGAGGCACGTGAAATTACATGGAGGCTCAGATATGGATTGCAGCGAGTCAAATATGTCTAACTGGGAAGAACTCGGTTCTGATGTTGTTGTGAAACATGAACCATTCGCAAATGCTGAAGGAATTGAGGCAATCACCATTAAGCGCGAGGAACCGTATGATTGTGAAGAAGTTCCTCGACTACCAGATACTGGGTTTATATCTTTAGTTTTTCTTCTTCCCACGGGCGACGGAGTTCTAGAGAACCTGGGCCTCCACTCCCAGATCGACATCGATCAAAACCACCACATAACCAAGGCCGATGAAATCCAAGATGTTGAATTACATATTGAGGAACCTGTGATTCTGAAAGAGGAACCTGTGATTCTGAAGGAGGAACCCATAACAGACAGTGATTCCTCGATAGATGTGGACCCATTGATTAAGCCTGACCCTGATGAAGCTCCATCCGCTAGCTCAGAGAAGAAACAATTCACTTGTGACATTTGCGGACACAGTCTCAGTGATAAATCCAATTTGGCTGCCCATTTGAGAACTCACACAGGTCAGTATCCCAACTACATGTAa
- Protein Sequence
- MDCSESNVSNWERLGSDVVVKHEPITNAGGIEPITIKREETYGSEEEPRLPDTDIDQYHHVTMANEIPDVELQIGEPVILKEEPITDSDSSMDVDPLLKPDPDEAPSTSSGEKPFACGLCDYKCSQKSSLKVHIVGVHTGEKPFACSLCDYKGNWKSYLKSHMAIHTGEKPFTCDICGLGLISNSDLALHMRTHTGGDKTFACDICDYATGVLKYLKKHMISHSGFFRTSMSRRSRVTTCFKGKYKQLASRSKVGPMYLFDGKAEGWVRRAQDASKTAKMVYRPRQNTSAGRFEPHLPLTLHLWVTRSQLRLRETGSGPQPGNPSQKLHFGTSRRGNEGTTLTTAITLTTTINPGEKPFACNICDYATVLLKNLKKHKKSHSDEKQYACAICDFRTVQYSSLLRHINTHTLEKSFACDSCDFKSVNWSELLKHVVTHTGEKPYKCNDCDYATTRKCNLLRHVISHEGSDMDCSESNISNWEELGSDVVVKHEPFANAEGIEPITIKHEETYYDCKDDTRLPDTDIDQNHHITKADEIQDVELQIEEPVILKEEPVTDSDSSIDVDPLLKPDPDEAPSTSSEKKQFACDICGHSVSRKSEVAVHMRSHTGEKPFTCDICGLGLISNSDLSVHMRTHTGERPFSCDHCDYKATKKSYLISHQKMHTGEKPYKCHYCDYATAQKCHLLRHVKLHGGSDMDCSESNMSNWEELGSDVVVKHEPFANAEGIEAITIKREEPYDCEEVPRLPDTGFISLVFLLPTGDGVLENLGLHSQIDIDQNHHITKADEIQDVELHIEEPVILKEEPVILKEEPITDSDSSIDVDPLIKPDPDEAPSASSEKKQFTCDICGHSLSDKSNLAAHLRTHTGQYPNYM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -