Ldol071289.1
Basic Information
- Insect
- Leptopterna dolabrata
- Gene Symbol
- -
- Assembly
- GCA_954871275.1
- Location
- OX940988.1:14344101-14365394[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0021 0.66 12.6 1.0 2 19 41 58 41 61 0.95 2 13 0.00014 0.046 16.3 1.0 1 23 175 198 175 198 0.98 3 13 8.3e-05 0.026 17.0 1.9 1 23 203 225 203 225 0.98 4 13 2.4e-05 0.0077 18.7 1.1 1 19 231 249 231 252 0.95 5 13 2.2e-07 6.9e-05 25.1 0.3 1 23 263 285 263 285 0.97 6 13 0.0014 0.43 13.2 4.1 1 23 295 317 295 317 0.99 7 13 2.3e-05 0.0075 18.7 1.4 1 23 323 345 323 345 0.98 8 13 1.2e-05 0.0039 19.6 3.3 1 23 351 373 351 373 0.98 9 13 1.6e-05 0.0052 19.2 3.1 1 23 379 401 379 401 0.94 10 13 1.5e-05 0.0046 19.4 1.1 1 23 424 447 424 447 0.96 11 13 1e-07 3.2e-05 26.2 1.2 1 23 453 475 453 475 0.98 12 13 1.3e-06 0.0004 22.7 0.8 1 23 481 503 481 503 0.96 13 13 2.7e-06 0.00086 21.7 2.0 2 23 510 532 510 532 0.96
Sequence Information
- Coding Sequence
- ATGTGGAAGAAGAAAGTCACTGACTCTCCAAAAGGTAAAGGAGCCAGTTCGAAGAAAGAGAAAGCCTCGCCGAGGAAAGCGACTGCCGAAGTTGATAACAGTGAAAAGCCCTATGAAGCCAAATGCTTCTTTTGTCCCAAGACATTCAAAACACTAACTGGATTGAAAAATCACGAAGGGAAATGCAAGAACAAGCCCAAAGCTCTGAGTCTGGGAGCAACCGCACCACCGAAGGTCGAGGGAGAGGCGTTGGATGTGCCGGAAGACGATTCAGAAAAGAAACCGACAGCCGTCGATCTCAACCCGGACACAGACCCACTTGCTGCGGCCTCTGAAGGCGAAGAGGACAGGCACGAGGGTCAGAGCGGGGATGATGACAGCGAGAATTACAGTGACAACGACGAGGAATTCAAGCAAATCAAGGGAGATCCCGACGGCGAAGaTGTGATGAATAGACCTGACGAGAATGGCTTGTGCCTCTGCTGTGGGGAAGACTTTGCTACTGCTCACTCCACGGGAAAGTTCCAGTGTGCCGTGTGCCTGAAGTTGTTCCAGAGTAAAACGTCTTTGGAACGCCACATCAAGACGATGCATGATGGTGATAACCACACGTGCCCTCAGTGCGACGCCAAGTGCCCAGATAAGGGAACTTTGGCCCGCCATATGTACACCCATACTGGGTTGAAACCGTATTCGTGTCCAGTCTGCAAGCAGGAGTTCAGCAGAAAGTACCACCTTGTGAGGCACAACATGCAGACTGGCTGCGATGGCAAAGCCAAACCTGTTTTCCCTTGCCAGGTCTGTGGTAGGGAATTCAACAGGAAGGATAATCTGAGAGAACATCTGCGAGCTCATGCGGGGCAAACCAAGAGAAAGAAGATGTTCACTTGCGACATCTGCAACGAGGAGTTTTGTGGCTCCAATTTGCTTCACATGCACAGGAAAACCCATTTAGGTGACAAGCAGTACGCATGCGACTTCTGTCCTAAGAAGTTCCAGTCGAGTGGAGCAATGAAGAAACACCGTAGGACACACACCGGAGAAAAACCTTACGAATGTGTAACGTGTCACAAGTGTTTTGCTGCCAAAGAGACGCTGAACCGCCACATCCGGATACACACTGGATACAAACCCCACGCCTGCAACTACTGTGGGAAACGGTTCATTCAGACTTCCCAACTCCGCTCGCACCTCTTCTACCACACTGGACAAACTGGTACTGTCGCCATAGACGCCCTCGGCGGTGTCGTTATCGGGCCTcacgagccgttcgtgtgcGAGCTCTGCGGAAAGAGCTTCAATCGCAGGGCCCGACTCAACGAGCACACCAAATACACTCACTTAGGGGCCAAGCCCTACGAATGCCCCCACTGCTCCAAGCAGTTCATCAGGAAAGAGGATTTGAACCGGCATATGATCATTCACACGGGAGTCAAAGCTCACGCGTGCCCCATCTGTAGTAAATCATTTGCTATGAAATCATCGCTCAAAGTTCATCTCCTGACCCACACCAAGGAACCTCCCAGGTCTTGTGATGAGTGCGGACGCGCCTTCATAAGGCAGGATTGCCTCCTCCGCCACATGAGGAACAAGCATCGGGACATGCTCGAAGAGATCAGATCCGAAGCCGAAAAGAAGAAACTCCAGCAGCAACTATTGCAAGTGAGTGGGGTCCACTTATTGAATTTTACTTGTGATGGAAACGGGCACCCAGGCGTCTCGGCAATGAGACGCCTGGGTATCACTCTGTTGAAGCCGGACTTGGCAGGAAGGCTGGATGAAGAACTGGTGAAGCAGAAGCGCAACCATGACAGGGCGCAGCTAAAAGAGTTCTTGGAGGGAGAGACGGTGTGGGTAAAACGAAAGAAAGAAGACAAGAAGTTTTCAGAAGCGACAGTGAAGAGGAAGACGGGACCGCTATCATACATAGTCGAGGTTGAGGGGGTGGAGCGCCGGGTCCACGCCGACCACATGCAGAAGGCGTGA
- Protein Sequence
- MWKKKVTDSPKGKGASSKKEKASPRKATAEVDNSEKPYEAKCFFCPKTFKTLTGLKNHEGKCKNKPKALSLGATAPPKVEGEALDVPEDDSEKKPTAVDLNPDTDPLAAASEGEEDRHEGQSGDDDSENYSDNDEEFKQIKGDPDGEDVMNRPDENGLCLCCGEDFATAHSTGKFQCAVCLKLFQSKTSLERHIKTMHDGDNHTCPQCDAKCPDKGTLARHMYTHTGLKPYSCPVCKQEFSRKYHLVRHNMQTGCDGKAKPVFPCQVCGREFNRKDNLREHLRAHAGQTKRKKMFTCDICNEEFCGSNLLHMHRKTHLGDKQYACDFCPKKFQSSGAMKKHRRTHTGEKPYECVTCHKCFAAKETLNRHIRIHTGYKPHACNYCGKRFIQTSQLRSHLFYHTGQTGTVAIDALGGVVIGPHEPFVCELCGKSFNRRARLNEHTKYTHLGAKPYECPHCSKQFIRKEDLNRHMIIHTGVKAHACPICSKSFAMKSSLKVHLLTHTKEPPRSCDECGRAFIRQDCLLRHMRNKHRDMLEEIRSEAEKKKLQQQLLQVSGVHLLNFTCDGNGHPGVSAMRRLGITLLKPDLAGRLDEELVKQKRNHDRAQLKEFLEGETVWVKRKKEDKKFSEATVKRKTGPLSYIVEVEGVERRVHADHMQKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -