Basic Information

Insect: Leptopterna dolabrata
Gene Symbol: Ptcd1_1
Assembly: GCA_954871275.1
Location: OX940983.1:15491596-15540656[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 24 0.00057 0.18 14.4 0.9 3 23 533 553 531 553 0.97

2 24 0.00067 0.21 14.2 1.6 1 23 559 581 559 581 0.97

3 24 1.3e-05 0.0043 19.5 0.1 3 23 588 608 587 608 0.97

4 24 0.0093 3 10.6 0.0 2 23 615 636 614 636 0.95

5 24 0.48 1.5e+02 5.2 0.7 1 23 648 671 648 671 0.93

6 24 2.8e-06 0.00088 21.7 1.7 1 23 686 708 686 708 0.98

7 24 2.1e-06 0.00066 22.0 0.2 1 23 714 736 714 736 0.98

8 24 5 1.6e+03 2.0 1.4 1 15 742 756 742 756 0.91

9 24 0.0016 0.49 13.0 6.2 2 23 794 815 793 815 0.98

10 24 0.95 3e+02 4.3 4.6 1 23 851 874 851 874 0.95

11 24 1.3e-05 0.0041 19.6 4.9 1 23 997 1019 997 1019 0.99

12 24 4.9e-06 0.0015 20.9 1.1 1 23 1025 1047 1025 1047 0.98

13 24 2.7e-07 8.6e-05 24.8 0.4 1 23 1053 1075 1053 1075 0.96

14 24 0.0014 0.44 13.2 1.4 1 23 1081 1103 1081 1103 0.98

15 24 0.014 4.5 10.0 2.8 1 23 1279 1301 1279 1301 0.97

16 24 0.00042 0.13 14.8 0.1 2 21 1308 1327 1308 1328 0.94

17 24 0.018 5.8 9.7 3.3 2 23 1359 1380 1358 1381 0.95

18 24 2.3 7.3e+02 3.0 0.5 1 23 1384 1407 1384 1407 0.91

19 24 1.8e-07 5.8e-05 25.4 0.8 2 23 1556 1577 1555 1577 0.98

20 24 0.0011 0.36 13.4 1.3 1 23 1583 1605 1583 1605 0.98

21 24 1.2e-05 0.0039 19.6 1.1 1 23 1611 1633 1611 1633 0.98

22 24 0.03 9.6 9.0 1.6 1 23 1639 1661 1639 1661 0.95

23 24 0.0026 0.82 12.3 0.1 2 23 1821 1843 1821 1843 0.97

24 24 0.1 33 7.3 1.7 2 22 1973 1993 1972 1993 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	24	0.00057	0.18	14.4	0.9	3	23	533	553	531	553	0.97
2	24	0.00067	0.21	14.2	1.6	1	23	559	581	559	581	0.97
3	24	1.3e-05	0.0043	19.5	0.1	3	23	588	608	587	608	0.97
4	24	0.0093	3	10.6	0.0	2	23	615	636	614	636	0.95
5	24	0.48	1.5e+02	5.2	0.7	1	23	648	671	648	671	0.93
6	24	2.8e-06	0.00088	21.7	1.7	1	23	686	708	686	708	0.98
7	24	2.1e-06	0.00066	22.0	0.2	1	23	714	736	714	736	0.98
8	24	5	1.6e+03	2.0	1.4	1	15	742	756	742	756	0.91
9	24	0.0016	0.49	13.0	6.2	2	23	794	815	793	815	0.98
10	24	0.95	3e+02	4.3	4.6	1	23	851	874	851	874	0.95
11	24	1.3e-05	0.0041	19.6	4.9	1	23	997	1019	997	1019	0.99
12	24	4.9e-06	0.0015	20.9	1.1	1	23	1025	1047	1025	1047	0.98
13	24	2.7e-07	8.6e-05	24.8	0.4	1	23	1053	1075	1053	1075	0.96
14	24	0.0014	0.44	13.2	1.4	1	23	1081	1103	1081	1103	0.98
15	24	0.014	4.5	10.0	2.8	1	23	1279	1301	1279	1301	0.97
16	24	0.00042	0.13	14.8	0.1	2	21	1308	1327	1308	1328	0.94
17	24	0.018	5.8	9.7	3.3	2	23	1359	1380	1358	1381	0.95
18	24	2.3	7.3e+02	3.0	0.5	1	23	1384	1407	1384	1407	0.91
19	24	1.8e-07	5.8e-05	25.4	0.8	2	23	1556	1577	1555	1577	0.98
20	24	0.0011	0.36	13.4	1.3	1	23	1583	1605	1583	1605	0.98
21	24	1.2e-05	0.0039	19.6	1.1	1	23	1611	1633	1611	1633	0.98
22	24	0.03	9.6	9.0	1.6	1	23	1639	1661	1639	1661	0.95
23	24	0.0026	0.82	12.3	0.1	2	23	1821	1843	1821	1843	0.97
24	24	0.1	33	7.3	1.7	2	22	1973	1993	1972	1993	0.92

Sequence Information

Coding Sequence: ATGACCTTGTGTTTTTTGCGGCGAGCTGCTTCGCAGCTTCATTTGCTTTCGCTCAGGAGGGTGTCGACTGAAAAAGTTCGCGACCCTCTGCCCAGCCTTCGTTTCCCCAACACCTTTGGAAACCTTAGTCAAGAACGTGATGTCCGCATTGAGCAACTTCCAGAAGAGGAGGGCGACGTCGATAGGGTCGAGTTCATCGATGGAATCGAAGGGAAAACACGGATGCCCACTTTCAAATATTCCAGGATGATAAAGAAACTCATTGACAAGAAACAGttAAGAGATGCTTTGGATGTTCTGGACACTAGAATGAAAGCCGAAAAAGCGTATCCTGACAGTTATACTTACAGTTTATTGATAAGTGGCTGTGCTTCACACGGGTACACCAAAAAGGCGTTCCAGCTGTTCAACCAAATGAAAAAGCGTGGAATAGTCGTATCCGGGAACATCTACACATCTCTTATGAACGCTTGTGCAAACTGCCCGTTCCCAGAGGATGGGTTGACGAGAGTCGCTGGATTGAGAGAGCTGATGAAGGAAAAAGGCCACGATCCTAACGAGAGGACATACCACGCTATGATGAAGGCGTATGGAAGGTGTGGAGACCTTGAGGGAGCTTTTAGCGTAGTTGACGAGATGCTTGACAGGAAAAAGTTTGTGTCCAATTCGACGTATTGCTTCCTCCTGCAAGCTTGTGCCTCTGATAAGGAGGCTGGGTTCCGCCATGCTATTTTAGTTTGGAGGAAAATGTTGTCTCGGAAGATTAAGCCGACGATTTATAGCTACAACTTGATGTTGAGGTGTGCAAGGGACTGTAGTGTTGGGGATGTTGAAAGTTTTGTAGGCGACATCCAAAAAATGGTATCTCCACCTAGAAAAGATACCCATCTCCCAGGTGGCGGCAAGTCAAACCCTATGTTGCTGGCTGACCGTACGGCAACTCCTGATCTTCCTGCTCTGCTTTCGCCATTGCTGCCGTCTAATGTGCCTACTCCAGAAGTAGTTGTTCCAAATCTCCTATTTCCTGATCCCCGACTGGAATCATTCGTTACACTGGAGAACGTCAAGCATTCTTGGCACCGtttggGGCTTATCGGAGGAAGCAGCGGCTTCCTACAGACCATGGCAGCCTCTCGGACCTCGCCAGACATTAAAACCTTCACCCTACTTCTTGAAACCCTCGAACCGACGAAAGAATCTGAAGAGGAACTTATTAAATGCATGAAAAACGCAAAAGTAAAACTGGATCTTGATTTTTGCAACTTGCTCATAAAGAAAAGAGCGATGCATAACAGATTCGAAGATGCTAAGCAACTACCCCTTCTGAATAACAATCGTCAAATAATTCTCACTGAAGAACAAATTGTTACATTTAACAATGTGACAACCTCATCCATTCAGCAGAATGAATACTCTCACTTTTTAAGCCTGACAGCTGAGGACATCGCTGAAAATAGTGATTTCGATGTTTTGGATGATGGGAGAAAAGCCGCAATCATTGTAGAAAAAGATGATGTTTTAGCCCTCAACAACGTTCCTGCCCCAGTGGTTGATAGCGATGCTGTCAACCCTCCTGATAATACATGCCCCCAAGCTTGTGACACCTGTGGTTTAAGGTTCGAGTCCAGGAAATTATTCAAGAAACACATTCTTTCTCACTTACATGAAAAGCCTTACAAATGTCCTCACTGTCCCGAATCTTTCAATCATGAGTATAACTACATCCCCCATGTCGCCACTCACAACAAGAAAGATCCGTTTTGTCCTGTGTGCAACAAGAGGTTCAGTCGACTAGCTGGTCTCAAAGCTCATATCCTTATACATCAGTGTGATGACACTCTCCCTTGCCCTGAGTGCCTGGAGGAGTTCAGCAGCCAGAAACTCCTGGATGCCCATCGCCTTGAACACAAATCGGGCTTTGTGAAACAGCCAACCCGCTTTCATTACTGTGCAAGCTGCGATGACAAATTCGTGAGCCGAGCTTTCTTGAAGGAACATATCCAGGATGTTCATAAGctaaaaatgccgaagaaaattaaaaaaggcAAAGGCGGCTACATATGCGAATTCTGTAAAAAGCGATTTGCGAAACCCAGCCAACTTGTGAGGCATAGAAGAACTCACACTGGAGAAAAACCTTTCAAaTGTGCAGAATGCGGGAAAGGTTTTGGACAGAAGGGCAGCCTGCAGATCCACATGCTCAAACATTCTGGCGAACGACCGTATGCGTGCAAATACTGTTCCTCCCAGTTCAGCCAGAAAGAGAATGAAGGGAAAACGGTGGAGTCATCTGGGGTTGCCAGCAGTAATGATGAAGAACGTCCGCCGCCTATCGAAATCGATCTCCTTGGAAAATATTCATCATCCGAAGTCATCAATAAATGCAAACATTGCTCCAAAACGTTTCACAAACGCGCTGATCTCGTGAAACACCTAAAAATTCACAATGAAGAGAAAAAGCAAAAGACTGAATACGTGTGCGACTGCGGGAAACGTTTCCCATGTGAGACGAATCTGATGTGCCACGTCCAGACAGCTCATTCCGACGGATTCATGTGCCagatttgtgaaaaattctGCGAGACTGTCAAGGAACTAGATCATCACAAGAAGTGGAAACATGATGTAGTTGACCAAGATGGCAGTAGCAAACCATTGTATGTGGCTCAGGATAGCGGAGATATCCATGCACCCTCTGAACCACTCCCTGTTCCACCAGCGTCATCTACTGCCATCACTGTGGCTCCCGGTTCGAAAATTCTCGGTGACGTTCCTCTCGAATGCACCAAACTTCTCATCACTGGTGAAGGCACCATTGAAGTTGTCCATGATGGAGGAATAGAAGAGAGGAATGAAGTAAATCTCAAGTCGGATGCAAATATGCCTACTAGTGAAAATGCTGCTCCAGTACGGGAAGAAGGGGACCGATACCTTGTGCAGGAGGTAATTGAAGAATCTACAAGAGAAAACGAAGATAACTCAAGGAAGTACAAATGTGACCACTGCAACCTCGCGTTCAAGCAGCAAAGTCATTGGAAGTCGCATTTGAGGATCCATACTGGTGACAAACCTTATTCGTGCGAAGTATGCCACAAGACGTTTGCTTCGAAAAGTGCAATGACAGTTCATATGGGAACACACGATGACGTCCCAGCTTTCAATTGTGAGGATTGTGGCAAGGCCTTCTCAACTGCCCGTAGCCTGAAGCGTCATATGGACCTTCACGTTCCAGGGTTCCCCTATACTTGCTTCGTATGTTCCAGAGGTTATAAGACAAAAATGTCCTGGCAAAAACACCTGGCAACTCATTTGAAAATAACTCAGAAGGAGGATCCCGTCCAGAATGCTTTGGAAAACAAAGGAACAGCAGATGATGGTGTGGGATCTGTTCAAGTTCTCGCTTTATGTAGCAATCAGCAGGTTCATAATGATGGAGTCAGTGATCCAAAGAAAGACGTCTCTTCAAACAGTACTTTACAAGGAGATTGGAATGACGTCATGCAATCGTTATGCAACGGTTACACGATTCGTGTAGAATCGTCTCAACCTGGGCAGCAAGTCAATTTCAGCAATGCTCAAGATGTCACATCAGTTGCTGTCAGTCAGACACCATCGAAAACTAGCTCGAATACAACTCATCCTGAGAATGAAGTTCGATACGTGGGGACGACCGGTTCATGGAACGAGAAAAATCAATTGCTCAATGCTCAACCCATTCAAGATTTTGATGGATGTGTCTTCCTGCAAAATAGCGGAGATCTGCAAACTGTGAATCAGCCCCACCCAGCCAGTGTGCCTTCAGTAGTGGCGGTCGTCCCTCCACAGGCCAACACCCATCGCTGCTCCTTATGTGATGTCTGCTTCGATAATCTCGTTGAGCTGTCCATACACAAGACGACGCATCTACAAGATAAATGGGCAACCTGTGCCACTTGTGATAAAGCCTTCAGCTCCTTGTCAGATTACCAGGCTCATACGAGGGTTTGTCCACCACCTACCTCAAATGAACAACTAGTCTGCAAACCCAATGAAGATTACATAAGTGTCGATTTTCTATCGGCTTCAAAACTACAGAAATGCACGACCTGTGATATCCACTTTTTCCAACTGTCAGACTACGTTATCCATGTTAACACTCATCACGGGGCCTTCGCTTGCAGAAGTTGCACCGAGTGGTTTAAAACCGACGATGAGCTCAAGGATCATCAGGACCAGTCTCATAGGGAAGAATTTTCTGCGAATGAGGAGGATCCTGGAGCATCTAAATTGCAGCAGACTGCATCTGAGGTTGCCAGCGTAGCGTTACAAGTAGGGGAGAGTGATGGTGGAGAGAGGAAATCGGGAAGCTTTAAGGAGAGGTTAGAGCTGAAGAGAAAGAGGAACGCTTGGAGGCGGCAGGCGATCAGGCCACTCACGGAAGAAGAGCTACTTGCCGTCACCAAAGAGAGGCCGAGTTCCATATCAGAAAAAATTCTTCAGCAGTCCATTTTACGCTTGAAGAAAGAGCCCGCCAAACAGTCTCACACCAAGCTCGCCGAGGTCGCCCTCAGCATCCTCCAGCCATTTCTTACCAAGTCTTCCCCACACTCGGCGCCCCCCATGGTTACCATCCAATACTGCTCTCAGGGAGCTCTTTGGGAACCTGAAAAGGGTAAACATCCCAACCAGTGCAAATACTGCCCTAAGAGCTTCCGCAAACCTTCTGACCTTGTTCGACATTTGAGAGTCCACACTGGAGAGCGGCCCTACACTTGTACGTCGTGCAACAAGTCGTTCTCGATCAAATCGACGGCTAACAGCCACGTTAAAATCCACAAGAAGGAACAAGCGTACACCTGCCACATTTGCAACAATTCCTTTGCTACTATCGGAAGCCTCAAAGTGCACATGAGACTACATACAGGAGCCAGACCGTTTGCATGTGAGCTGTGCCCAGCAAAGTTCCGCACCTCAGGTCACAGGAAGTCTCACGTTTTTTCCCATATCAAGAAAGAATCGGCCAAAGAGAAATACATACCGTTACCCGTTGAACAAGCTTCATCGCCCCAGAGGTCAGCGGCGTCACCGTCCGTATCACCTAGGTCCTCCGTTGTACCCCCTCCTGCCGAATACCAGGAGCCCGCCCCAGACTTCATCAAACCCTCTGAAAAAGATGTCGAGATGGAAGCCGACTCTCTCAAGAAATCCCATCCAAGTCAATTCCTGTTCTCGCTCGACAACGCCCTCAGCTTCGGCGACAGACCGGGCGAACCGTCGAATCAGCAGTTCTTCTTGAAGGAGATCAAGGGAAACGAGCAGGCTGGGACCGCAGCGCATTTCGTCGTAACGATGAGCGATGACATCAATTATCAGGATAACATCAATGATCTTTTGGAGTCAGTACCTAATCTCAACGTGGACCACGAAGACAGGTTGAATTTGGAACTAGATCTCGAAGGACCTAAACAGCAGCTGAATGAAACGTGCACCGTCTGTGGAAAAGTGTTCGGTTCCGGTATTCTCTTGGATTCCCACATGAAGAAAGAGCATTTCTCCACTTCACTCCTTGCCTGCAATGTCAAAGCTGGATCTCGCAAACAAAAAGCTGCTATACACGTCGCTTATCAAGCCAGTTTGGACCTATGGCTGCGAAGTTTGGGGGGCTGCATgtgcaacaaaatccaaacccaGCAGAACAAGATCCTCAGACAGCTGTGCGATGCCTCTTGGTTTGTGAGGAATGAGGTACTCCACAGCGACCTGGGGCTAGAGGCAGTCCAGGAGAGGATTAGAGGGAGCTATGGGGTCTTGCGGTCAAGAGCAACCGCCCACTACAACCCGAAAGTGACATTCATCGCTGGGCCGGCACCCAGCACTGGTTGCAGGGGCAAGACGGATTTAGAGGTCCACATGCTCGTACACGAACTGGACCAGCTGTCGTGCCACGCTTGCTCACTTGAGTTCCCTGATGAAAGTTCGCTTCGGAAACACAAATGTACAAATGAAGACACCGACATGAAAACGATGCCTTCTACTTCCCTAGACCTCGCTTCCGTTGTTCACGAGTTTTTCTCGTTCCCTACTTTATAG
Protein Sequence: MTLCFLRRAASQLHLLSLRRVSTEKVRDPLPSLRFPNTFGNLSQERDVRIEQLPEEEGDVDRVEFIDGIEGKTRMPTFKYSRMIKKLIDKKQLRDALDVLDTRMKAEKAYPDSYTYSLLISGCASHGYTKKAFQLFNQMKKRGIVVSGNIYTSLMNACANCPFPEDGLTRVAGLRELMKEKGHDPNERTYHAMMKAYGRCGDLEGAFSVVDEMLDRKKFVSNSTYCFLLQACASDKEAGFRHAILVWRKMLSRKIKPTIYSYNLMLRCARDCSVGDVESFVGDIQKMVSPPRKDTHLPGGGKSNPMLLADRTATPDLPALLSPLLPSNVPTPEVVVPNLLFPDPRLESFVTLENVKHSWHRLGLIGGSSGFLQTMAASRTSPDIKTFTLLLETLEPTKESEEELIKCMKNAKVKLDLDFCNLLIKKRAMHNRFEDAKQLPLLNNNRQIILTEEQIVTFNNVTTSSIQQNEYSHFLSLTAEDIAENSDFDVLDDGRKAAIIVEKDDVLALNNVPAPVVDSDAVNPPDNTCPQACDTCGLRFESRKLFKKHILSHLHEKPYKCPHCPESFNHEYNYIPHVATHNKKDPFCPVCNKRFSRLAGLKAHILIHQCDDTLPCPECLEEFSSQKLLDAHRLEHKSGFVKQPTRFHYCASCDDKFVSRAFLKEHIQDVHKLKMPKKIKKGKGGYICEFCKKRFAKPSQLVRHRRTHTGEKPFKCAECGKGFGQKGSLQIHMLKHSGERPYACKYCSSQFSQKENEGKTVESSGVASSNDEERPPPIEIDLLGKYSSSEVINKCKHCSKTFHKRADLVKHLKIHNEEKKQKTEYVCDCGKRFPCETNLMCHVQTAHSDGFMCQICEKFCETVKELDHHKKWKHDVVDQDGSSKPLYVAQDSGDIHAPSEPLPVPPASSTAITVAPGSKILGDVPLECTKLLITGEGTIEVVHDGGIEERNEVNLKSDANMPTSENAAPVREEGDRYLVQEVIEESTRENEDNSRKYKCDHCNLAFKQQSHWKSHLRIHTGDKPYSCEVCHKTFASKSAMTVHMGTHDDVPAFNCEDCGKAFSTARSLKRHMDLHVPGFPYTCFVCSRGYKTKMSWQKHLATHLKITQKEDPVQNALENKGTADDGVGSVQVLALCSNQQVHNDGVSDPKKDVSSNSTLQGDWNDVMQSLCNGYTIRVESSQPGQQVNFSNAQDVTSVAVSQTPSKTSSNTTHPENEVRYVGTTGSWNEKNQLLNAQPIQDFDGCVFLQNSGDLQTVNQPHPASVPSVVAVVPPQANTHRCSLCDVCFDNLVELSIHKTTHLQDKWATCATCDKAFSSLSDYQAHTRVCPPPTSNEQLVCKPNEDYISVDFLSASKLQKCTTCDIHFFQLSDYVIHVNTHHGAFACRSCTEWFKTDDELKDHQDQSHREEFSANEEDPGASKLQQTASEVASVALQVGESDGGERKSGSFKERLELKRKRNAWRRQAIRPLTEEELLAVTKERPSSISEKILQQSILRLKKEPAKQSHTKLAEVALSILQPFLTKSSPHSAPPMVTIQYCSQGALWEPEKGKHPNQCKYCPKSFRKPSDLVRHLRVHTGERPYTCTSCNKSFSIKSTANSHVKIHKKEQAYTCHICNNSFATIGSLKVHMRLHTGARPFACELCPAKFRTSGHRKSHVFSHIKKESAKEKYIPLPVEQASSPQRSAASPSVSPRSSVVPPPAEYQEPAPDFIKPSEKDVEMEADSLKKSHPSQFLFSLDNALSFGDRPGEPSNQQFFLKEIKGNEQAGTAAHFVVTMSDDINYQDNINDLLESVPNLNVDHEDRLNLELDLEGPKQQLNETCTVCGKVFGSGILLDSHMKKEHFSTSLLACNVKAGSRKQKAAIHVAYQASLDLWLRSLGGCMCNKIQTQQNKILRQLCDASWFVRNEVLHSDLGLEAVQERIRGSYGVLRSRATAHYNPKVTFIAGPAPSTGCRGKTDLEVHMLVHELDQLSCHACSLEFPDESSLRKHKCTNEDTDMKTMPSTSLDLASVVHEFFSFPTL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -