Ldol021503.1
Basic Information
- Insect
- Leptopterna dolabrata
- Gene Symbol
- -
- Assembly
- GCA_954871275.1
- Location
- OX940975.1:6058254-6059011[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.3e-08 2.3e-05 26.1 0.1 1 41 15 54 15 65 0.93
Sequence Information
- Coding Sequence
- ATGGTTCGAAACTACAAGAGGAAAACAAACCGGGCGAACGTCGATGAGGAGGCTATGAGCGAGGCAATAAAAGCCGTGGAAATGGGCGCTTCCACCCGCACTGCTGCGTCGATCCATAACGTCAAACGGGACACACTTGTATCACGattgaagaaaataatgaacgtgATCCAAGGCAGGGTAGTATCTCGTGGCAATGATTCAGGTAATGAATCTTCTGGAAGTGAAGAAATCGAGGAAGCAGTGAGTTATCAGTTCAGCTCTAAATATGCTGTAAGGCAGGTTTTCACTGGAGAGCAGGAGAAAAACTGGGAGATTGATTATGCCAAACTTCTCAACTGTAAGAATGTTCCGATTTCATGGACTGAGGAAGGACTGGCTGGAAAAGACTGGCTTTCAGGTTTTATGAAGCGAAACAAAGATCTTTCACGGAGGAAACCAGAGAGCACAAGTTTGTGCAGGGTGACGGCATTTAATACGAACAGAGTCAACGAATTTTTCACCAGCCTTCGGTATCTTTACGATAAGTATAAATTCCAGCCTCATCAAATATTCAATCTGGACGAGACAGGAGTAACAACTGTTCCAACTACAATAAAGGTTGTTGGCCTTAAAGGAACATCAAGCGTGGACAGATCTAACGTGATCGCGAAGCTAGCTAGGGGAGAGTGGGGCAGTTTCAACCAGTTTTCAACATAA
- Protein Sequence
- MVRNYKRKTNRANVDEEAMSEAIKAVEMGASTRTAASIHNVKRDTLVSRLKKIMNVIQGRVVSRGNDSGNESSGSEEIEEAVSYQFSSKYAVRQVFTGEQEKNWEIDYAKLLNCKNVPISWTEEGLAGKDWLSGFMKRNKDLSRRKPESTSLCRVTAFNTNRVNEFFTSLRYLYDKYKFQPHQIFNLDETGVTTVPTTIKVVGLKGTSSVDRSNVIAKLARGEWGSFNQFST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00883916; iTF_00883920; iTF_00883921;
- 90% Identity
- iTF_00883916;
- 80% Identity
- iTF_00883916;