Ldol066517.1
Basic Information
- Insect
- Leptopterna dolabrata
- Gene Symbol
- -
- Assembly
- GCA_954871275.1
- Location
- OX940986.1:20353730-20355334[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.9e-08 1.1e-05 27.2 0.0 2 34 22 54 21 58 0.93
Sequence Information
- Coding Sequence
- ATGGCCCCGTCAACACGCAAAAAGAAGGAAGCGAAAAAAATCCAGCGTCGCCGACAGTACAGCCAGGATGAGTTGGAAAAGGCTTTGAAGGAATTAGAGGAGGGTGTATTGGGCATTCGAGCTGCCTCCAGAAAGTATGGTATTCCACGGTCCACATTAGCGTTCCGCAATAGTCCAAACTTCAAAAAACCGGAGAGTGGGCCAAGCACATTTCTCACGAAAGAAGAAGAGGCTATGTTGGTCAAATGGATCGAGGAGTGCGCAAGGAAAGGCTTTCCAAGGCAAAGTTTAGAGGTTCAGCTTAGTGTCCAAGAATTCCTTAATATGAATCCACGAGAAAACGTCCCGTTCACAAACAATAAACCAGGGAGGAAATGGTTGAGAAGCTTCCTTAAGCGAAATCCTCAAATCGTTCATAGCACTTCGGAGGCGGTCACTCCCGCCAGTGGATGTGTTTCGAAGGATGACATTGTAGGGTGGTTCTCATCAGTTGAAAAAATATTGCAAGAAGAAGATTTAATGAGTATTCTCAATGACCCAACTCGAATTTTCAACGCGGACGAGAGTGGGTTTGTCTTATGCCCAAATCAGGGAAAAGTGCTGGCGAAAAAAGGTACgaacaatgtttttgaagtggACTGTGGTCAAGCTAAAAGTTCAATCACTGTCATGTTTTCATTTTCGGCTAGTGGAGAACTCGTTCCCCCCATGGTTATTTACCCCTATAAAAGAATCCCAAAGGATATCGCTGACTCAATTCCAGACAATTGGGGTGTTGGCAGAAGTGACAGTGGGTGGATGACGTCGGAGGTTTtctttgaattcatttcaataattttcaacagCCATTTGGAACAGAAAAAAATCCAGAGACCCGTCATTCTCTTTGTCGACGGCCACAAGAGCCATCTCATGTACCAGCTGAGTGAGTTATGTAGCGAAATTGGCGTAGTTTTGGTCGCCCTTTACCCAAATGCAACCCGACTGCTGCAACCTGCTGACGTGGCCGCCTTTAAGCCATTGAAGGAAAGCTGGAAGAGAGCCGTATTACAGTGGAGGCACAAGAACCCCTGTGAGCAGATAACGAAGGTAAAGTTCGCTCCAATGTTGAATGATGCTCTCGGGGCCATATCTGCAGAAATCTTAAAAAGTGGCTTTCGCACTACTGGTCTGTACCCATGGAACCCCCACGCCATAGATCCGTCAAAATTTCTCGGATCGTCGACAAACAACAACAGAACTGACGATGACTCGCATCCTTCCGTTCTTATTAGGGACATGTTCGTATGGATAGTGGGAAGTGAACTTATGAAGTCGCTCACTGAAGCTTCAAACCAGCACCGAAACGATCCTTATTTTCAGGCTCTTGTGGCCCTCAATAAAGCAATTTCTGGAAGTTCCCCGCAGTCCCGAAGGGTCCCTTCGGAGGAGCAGAAGGTTCCTCCTCCCCAGCTTGAAGAAGCGAGCATGGATGTTCAACGCTGTGAAGAACTTTCACCTGTCAGCTTCACAACTCCTTCCACAAGCAGCAATGTCAGCCACCTACAACGAACTCTATTGTTCCCCTTATTCACAGCGAATCTCGTACCCTTGCTCCTCCTATGA
- Protein Sequence
- MAPSTRKKKEAKKIQRRRQYSQDELEKALKELEEGVLGIRAASRKYGIPRSTLAFRNSPNFKKPESGPSTFLTKEEEAMLVKWIEECARKGFPRQSLEVQLSVQEFLNMNPRENVPFTNNKPGRKWLRSFLKRNPQIVHSTSEAVTPASGCVSKDDIVGWFSSVEKILQEEDLMSILNDPTRIFNADESGFVLCPNQGKVLAKKGTNNVFEVDCGQAKSSITVMFSFSASGELVPPMVIYPYKRIPKDIADSIPDNWGVGRSDSGWMTSEVFFEFISIIFNSHLEQKKIQRPVILFVDGHKSHLMYQLSELCSEIGVVLVALYPNATRLLQPADVAAFKPLKESWKRAVLQWRHKNPCEQITKVKFAPMLNDALGAISAEILKSGFRTTGLYPWNPHAIDPSKFLGSSTNNNRTDDDSHPSVLIRDMFVWIVGSELMKSLTEASNQHRNDPYFQALVALNKAISGSSPQSRRVPSEEQKVPPPQLEEASMDVQRCEELSPVSFTTPSTSSNVSHLQRTLLFPLFTANLVPLLLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -