Ldol061114.1
Basic Information
- Insect
- Leptopterna dolabrata
- Gene Symbol
- -
- Assembly
- GCA_954871275.1
- Location
- OX940984.1:15583103-15585895[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1e-07 2.8e-05 25.8 0.0 4 34 37 66 34 73 0.90 2 2 7.4 2e+03 0.7 0.6 13 24 520 531 519 532 0.88
Sequence Information
- Coding Sequence
- ATGGCTCCTACAAAACAGCATACACTGAAGAAAAATTCCAAAAGAGCGCGAAGAGGAAATCCGAAGAAGGCTGCTGCTCCTATTCCAAGAAAACAGTACGAGGAGAGTGACATGCTGAAAGCAATTGATGCTGTCAGAAATGGTATGCCAGTGGCAACAGCTGCAAGGAGTTTTGGAGTACCTCGGATCACTCTTATGTATAAAGCATCTGGTAAGTCACCAATCCAGGGAAATCCTGGCCCCAATACTGTCTtgacaaaagaagaagaagggcaTCTAGTTCAATGGATCAACAAAATGGCAAGAAGAGGGTTCCCAGTCACCAGTCACCAACTGCAAGACAGTGTCCAAAAAATTATCCAAAATATGAAAAGGGAATCCCCATTTGTAAGTGACCGTCCAGGAAGAAAGTGGCTCGATGGATTCAAGAAGCGAAATCCCACCATATCTCATAGGGTAGCGGAAAACTTAACACTGAGCAGAGCCTCTGTAACGAGAACACAGATAGAATCTTGGTTCAAAGATACAGAAAACTACTTGCAAGAAAATGAATTATTCGAAGTATTGAAGGATCCCAGAAGAATATTTAATGGGGATGAAACTGCCTTTTTCCTCAACCCCAAAGGCAAGAAAGTCTTGGCTCCAAAGGGCGACAAGTCGGTGTACCTCACTGTAAATAATGATGAGAAGGAATGCTTGACAGTACTCATCACAACTAATGCATGTGGTGAGCTAGCTCCGCCAATGGTTGTATTTCGTTACGACAGATTGCCCGAAAACATTGTGCTTAGCATGCCGAATGAGTGGGGCATCGGTAAATCCCAAAATGGTTGGATGACTGGCGCCACGTTTTTCGAATATTTTGCCAATGTATTCGATCCCTGGCTGGAAAAGAGTGAGATCACTCGACCAATACTGTTCTTTGTGGATGGGCATGTTTCACATCTTACGTATCATCTGAGTGAATTCTGTGAGACAAGGAAAATTATCTTGGTCGCTCTACCTCCCAACACTACGCATTTTATGCAGCCGATGGACGTCGCAGTATTTCGTTCCTTGAAGGAAAACTGGAAAACCAAAGTACACAATTGGCGGATAAAACGTGTTAACGAACAGAACTTacttttgaagaaaaaagaTTTTGGTCCTTTATTGAATGAGGTTTTATCTCATACCATAACCTATTCCATGGTTGCTAATGGTTTCAGAAAGTGTGGGCTCTACCCTTGGGACCACCGGGCCATTAGTATGTTTGCTGATGAGACCTCCAACGCCAGTTCTTCTAGCAGAAACAACTCGTTCGACTCCAAAAGGATTTTTCAAGGGTTGGCAGTCATGGAGCACTTTATGGGCGAAGAAATTGTCAAGAAATTTAAGAACTCACTATCAGGAACTGACAATGTTCGAGATGAATCTCTTTTCAGAGTGTGGACAAACATGAGGAGTTTCCTCGCGGATCCTATAGCCCAAACATCTCTAACACCATTACACCAAGAAGAGGGTAGAAGAGTGGAGCTTGAACAGTTATGTCCACCTGAACAAGTACCAAGTACTTCACGGTCCGGTCAAATGTCCACAAATGCAGCAAGTAACTCATTATTACCAAGCCCATTCAAGAATGCCCTAATTTGGCCCGAGGAACGCGATAATACAAGTATCAACAAGCGCAAGAAGGAAGTACTACCAAGTGTGGTGTCTTCAAGTGATTATAAAAACTATCTGAAAAGGAAAATGGACAAAAAAGTAGAagaggaagagaagaagaaagcCAGAACAACTCTACGAGCACAAAAAAAAGCAGAAAAAgaattgattaaattgaaaaagGCTGCAGAaagagagatgaaaaaacagcAACAAAAGAATAAGAAGCAGGTACAACCAAACAATAAGAAACCCAAGACAAAAAAGGGTCAGATAGTTCATGAAACCTCTTGTGAAGAAGATGAGTGGCAACCAGATGATACAGACGAAGATGGAATCAGTGATGGTGAAATAAATAACAGTGATCTTGGTCAACTTGATGATGAAATGAATAGCAATGATCTTGGTCAACTTgatgatgaaataaataacaatgatCTTGATCAACTCAACTtcgataagcaacttgataaTTCGACTAACATCAGCATGGCAGCGAACTTCTCTGAGGTTCATGATATGCGTGAGGGGCTAGTGCAAACAATTCGAGACGTTTTAGACGAATCAAGTGAAGAAATGGAAGATCTTTATTTGCCCACCCATCAAGAACTTGATTTAAGAGAAGTTGGGGCAAATGAAACATGCTCCAATGCTACGGGAGAGCTGAGAACCGTTTTTTCAATTCCCCAGGAATCTCCTAAATTAAACTCTTCGGGAATCGATGAAGCTGTTATCGGAGTTGTTGAAGGTGACCAAATTGTTGATGAAGATAATGTTTCTTTAACCCTCCAAGAGAGTCATCCAAATCTTGAAAATCTGGGAAACGAGTCAACTGATCAAATCATCTCGGAATCAAAAGAGGAAAAACATTGCAGTAGAATTCAGATGGGTGACTACATCACTGTCGCACTGAAGAACAAAAGGAAGAAAACAATAGTAGCCTGTCAAATCTTTAACGTAGAGGGAGGAGAGGCAAAGGCTTATTTTTTAAACCCATGCAATCGGATGAAAACTGTATTCCAAGTAGACAGGAATCAAGAAATTCCATTCGAAGACAGTCAAGTTATTACGAAATTGCCAAAGCCTCTGATATTTGGCTCACATGAAACAGGAAAAATTTTATTCCCTGACCCAGTAAATGTAGACTGA
- Protein Sequence
- MAPTKQHTLKKNSKRARRGNPKKAAAPIPRKQYEESDMLKAIDAVRNGMPVATAARSFGVPRITLMYKASGKSPIQGNPGPNTVLTKEEEGHLVQWINKMARRGFPVTSHQLQDSVQKIIQNMKRESPFVSDRPGRKWLDGFKKRNPTISHRVAENLTLSRASVTRTQIESWFKDTENYLQENELFEVLKDPRRIFNGDETAFFLNPKGKKVLAPKGDKSVYLTVNNDEKECLTVLITTNACGELAPPMVVFRYDRLPENIVLSMPNEWGIGKSQNGWMTGATFFEYFANVFDPWLEKSEITRPILFFVDGHVSHLTYHLSEFCETRKIILVALPPNTTHFMQPMDVAVFRSLKENWKTKVHNWRIKRVNEQNLLLKKKDFGPLLNEVLSHTITYSMVANGFRKCGLYPWDHRAISMFADETSNASSSSRNNSFDSKRIFQGLAVMEHFMGEEIVKKFKNSLSGTDNVRDESLFRVWTNMRSFLADPIAQTSLTPLHQEEGRRVELEQLCPPEQVPSTSRSGQMSTNAASNSLLPSPFKNALIWPEERDNTSINKRKKEVLPSVVSSSDYKNYLKRKMDKKVEEEEKKKARTTLRAQKKAEKELIKLKKAAEREMKKQQQKNKKQVQPNNKKPKTKKGQIVHETSCEEDEWQPDDTDEDGISDGEINNSDLGQLDDEMNSNDLGQLDDEINNNDLDQLNFDKQLDNSTNISMAANFSEVHDMREGLVQTIRDVLDESSEEMEDLYLPTHQELDLREVGANETCSNATGELRTVFSIPQESPKLNSSGIDEAVIGVVEGDQIVDEDNVSLTLQESHPNLENLGNESTDQIISESKEEKHCSRIQMGDYITVALKNKRKKTIVACQIFNVEGGEAKAYFLNPCNRMKTVFQVDRNQEIPFEDSQVITKLPKPLIFGSHETGKILFPDPVNVD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00883910;
- 90% Identity
- iTF_00883910;
- 80% Identity
- -