Ldol005032.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Leptopterna dolabrata
Gene Symbol
-
Assembly
GCA_954871275.1
Location
OX940974.1:19626408-19633415[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 9.5e-10 2.6e-07 32.3 0.2 2 39 129 166 128 169 0.92

Sequence Information

Coding Sequence
ATGGAAGAAGTTGTTGAAGAGGTGATCATAGAATCAGCTGATGATGAATTTGTCGAAGTGTTATGGGAGCAACAACCATTTGTGGAAATCATTGAAGATGTCGTCCCAGAGCAATATAGACTGATCCCGCACACTAGTTATTCTGTGCTAAAAAAGGTAATAGATACGTTCATGAATTCGAAACGGCACACACGAGACAAAGAGAATAACGATTCCTTCATTGGAGAAGGACCAAAATGTGGATGTGCACGTATAGATGCACAGTACAGGGTTCGAGCTGGAATTAAGAGTCACATAGCTGGTCAAGTAACTAGAAGTATGGCTGCATCAACAAGGAGAAAGAAGAAAGCCAAAAATAATGCAAAACCTAAATTCCTGTACTCACAGGAGCAAATGGCAGCTGCTCTGCAGGCTGTTGCTGCAGGTGCGTCGGTCAGCAAAGCAGCTAAAATTCACCAGGTACCGCGTGTGACCCTTCTTTACAAAGTAAAAAGCAAATCACCCATCCAACGAAAAATGGGGCCCGATTCGATTCTTTCAAAGGAGGAGGAAGAGCTCCTAGTTCTGTGGGTTTCATCGCTCGGGAAAGCTGGGTTCCCAGTTACTAAAGCCCAACTGCTCATGGGTGTTAAGCATTTAGTAATATCACTCAACAGACCAAATCCTTTTAAAGACAATCTCCCTGGCAAGTCATGGTACAAGGGTTTTTTGCATCGACATCCAAGCTTGACTACCAGAATTTGCGAAAATCTTACCATTTCGCCAAATCTTACCAATGCCAGTCTTCAAGGATGGTATGACGAAGTCCACAATTACCTTAAAGAAGAAAATGTTTTGGACGTTCTCAATGACCCTTCCCGAATCTTAAATGCTGACGAGTCAGCATTCTTCCTTAATCCCTCGGGTCACAGAGTCCTTTCAAAGAAGAACGAGAAAAATATTTATCAGATAGTCAACGCAGACGAAAAGGAGTGCTTGACCGTCCTTGCTTGTGGAAACGCAGAGGGGAAGTTGGCTCCTCCGTTGATCGTATTCCAGTACCAGCGAATTCCACTCGAAATTGCAAAAAGCGTCCCGTCTGACTGGGGGATTGGAAAGTCCGATTCTGGCTGGATGAATGGAGCGGTTTTTTATGAGTATATCGCAAATTTGTTACACCCTTGGCTTGTGAAGGAAGGTATTAAATTTCCAGTAATTCTCTTCATCGATGGTCATTCATCTCATTTGACATTGGAAGTCAGCCAGTTCTGCTCCGAAAAGAAGATCATTTTAATTGCCCTCCACCCAAACGCAACCCATCTGATACAGCCCTTAGATGTTGCCCTCTTTAAATCCCTAAAGCAAAGCTGGCGATCAACTGTGCATGAATGGCGCTTCGCAAATAATAAAGAACCAATATTGAGGAAACCCGACTTTGCCCCTCTATTGAAAACGGTTCTAGACAGAATGCGACCAGAAATTTTACAGAATGGATTCAGGAAAAGTGGACTCTACCCGTGGAACCCAAATGAAGTTGTGGGCAACAATGATACGAATGATACATCCGATGATATATTTCAGATTGCTTGTCACCACGAATTAAAAACGGTTTTGAAAATCCTAGAGCTTCACATCAAACCAGAAACCGTCGCAGCTTTCCGAAGAGCTCCTAACTCTGACTGGGATGGTGCTGAAGAAGAAAAAGCCCTTTTTGAGGTTTGGAGGAGGATACAAAATTTGGTTGCTCCTGAACCATTTCCTATCGATGAGGCCACAACACCAGAAATAGGTATCTCCGATCCAGGAATCGAGGTTCAAGAAGATGGGAACTCAGAGCCAGTGCATCCAGTTTCTCGTGAAAATCTCATCAGCAGTCACCAGCCTTCAACTATTGAACCTCAAGCTTCCACCTCAGCCAGCGTTTCTAGTGATGTTGAAATGGTTGGCCAACCAGACCCCGTGATAGAGTTTGACGAGCTGACTACATATGCGGTTGTTGAAGATGAGAAAGAATCTCCCATTGATGAGCAGCTCTTATATGAAGACACACACTTTCTGGCGGTGCAAGACTTGCCAGAAGGGAATCATGAGGAACAGGACCTGGATCAAGACTTGATACCTGTCATCGATGTGAGCAAATCACAGACGATCGGCGAGCCTGAAAACACTAAAAGTGaaccccaaaagaaaaagaaagtaGAAACAGAAAAGAATGGAAGTGgcgaaacaaaaattgaaagaaGAACCGCTGGCGAAGCCAAAGTTGGGGATTTTGTAATCGTTCaccaaacaaaaagaaaaaccaaaTTCAAATGCCTTTTCAAACTGATGGAACGTCTTGACCATGAATGGTTCGCCATCCCGTTTAATCCATGTAATCGGATCAGGATGATCTTCGTGAAAAGTGAAAAGAAGATCACAAAAATTTCGATAACCGATATTCAAGAGATTCTTACCGCACCAGTTGTGCATGGCCAACGCTACCAGTTCCTCCAGCCACTGGACGTTGATTGGTAG
Protein Sequence
MEEVVEEVIIESADDEFVEVLWEQQPFVEIIEDVVPEQYRLIPHTSYSVLKKVIDTFMNSKRHTRDKENNDSFIGEGPKCGCARIDAQYRVRAGIKSHIAGQVTRSMAASTRRKKKAKNNAKPKFLYSQEQMAAALQAVAAGASVSKAAKIHQVPRVTLLYKVKSKSPIQRKMGPDSILSKEEEELLVLWVSSLGKAGFPVTKAQLLMGVKHLVISLNRPNPFKDNLPGKSWYKGFLHRHPSLTTRICENLTISPNLTNASLQGWYDEVHNYLKEENVLDVLNDPSRILNADESAFFLNPSGHRVLSKKNEKNIYQIVNADEKECLTVLACGNAEGKLAPPLIVFQYQRIPLEIAKSVPSDWGIGKSDSGWMNGAVFYEYIANLLHPWLVKEGIKFPVILFIDGHSSHLTLEVSQFCSEKKIILIALHPNATHLIQPLDVALFKSLKQSWRSTVHEWRFANNKEPILRKPDFAPLLKTVLDRMRPEILQNGFRKSGLYPWNPNEVVGNNDTNDTSDDIFQIACHHELKTVLKILELHIKPETVAAFRRAPNSDWDGAEEEKALFEVWRRIQNLVAPEPFPIDEATTPEIGISDPGIEVQEDGNSEPVHPVSRENLISSHQPSTIEPQASTSASVSSDVEMVGQPDPVIEFDELTTYAVVEDEKESPIDEQLLYEDTHFLAVQDLPEGNHEEQDLDQDLIPVIDVSKSQTIGEPENTKSEPQKKKKVETEKNGSGETKIERRTAGEAKVGDFVIVHQTKRKTKFKCLFKLMERLDHEWFAIPFNPCNRIRMIFVKSEKKITKISITDIQEILTAPVVHGQRYQFLQPLDVDW

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00883929;
90% Identity
-
80% Identity
-