Ldol025718.1
Basic Information
- Insect
- Leptopterna dolabrata
- Gene Symbol
- -
- Assembly
- GCA_954871275.1
- Location
- OX940975.1:59102693-59103169[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.7e-10 1.3e-07 33.3 0.0 3 42 19 59 17 61 0.89 2 2 0.32 87 5.0 0.1 11 24 136 150 135 151 0.83
Sequence Information
- Coding Sequence
- ATGCCGACACGTTATGTTAGAAAGAGCGGCAGTAGCAGAGGAAGCTGGAACCAGGAAGATATGCAGAGCGCCATGAAAGCTGTGAAGGAGAAGTTGATGGGCGTGAATCAAGCTGCTGCATATTTCAAGGTACCGAAAACTACATTAAAACGAAGACTAAAATCTGGCAAAGAGGAAGCAGGGTCTCTGGGACCACCACCACGTCTAGGAGCAGCTGCTGAGAAAAAGATGGTGCTTCATATAAAAAAGCTACAAGCTCATGGATTTACTCCAGACAGGACTGCAGTTCGAACTATGGCATATGCCTTAGCTGAAAGCCTCAAAATTCCTCATACGTTCAATCACGAAAGCCAGAAAGCAGGTTACGACTGGCTTGCCAATTTCTTGGCACGAAATCCTCAGGTTGCTGTGAGAAAATCAGAAGGTGTGTCGATTAACAGAGCTAGTAGAATGACCAGAACAACTTACAGTATCTAA
- Protein Sequence
- MPTRYVRKSGSSRGSWNQEDMQSAMKAVKEKLMGVNQAAAYFKVPKTTLKRRLKSGKEEAGSLGPPPRLGAAAEKKMVLHIKKLQAHGFTPDRTAVRTMAYALAESLKIPHTFNHESQKAGYDWLANFLARNPQVAVRKSEGVSINRASRMTRTTYSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -