Ldol045954.1
Basic Information
- Insect
- Leptopterna dolabrata
- Gene Symbol
- -
- Assembly
- GCA_954871275.1
- Location
- OX940979.1:36124408-36124827[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.3e-10 1.5e-07 33.1 0.0 2 40 16 55 15 60 0.90 2 2 0.38 1.1e+02 4.8 0.0 27 37 115 125 115 128 0.89
Sequence Information
- Coding Sequence
- ATGGTAAGGAACTACCAGAAGAAGAGGCCACCACCTCCGTACTCGAAGGAAGACTTGAAAAAAGCTATAGATGCTGTTAGAAAGGAGCTCTTAACTTTGGCTGCAGCTGCAAGAGTATTCAGCATTCCCTACCCTACGCTTTTCAAACAATATAAGAAACAGAGGGGTGTAAAGAGCACAACTGGGGGCAGAAGAACTGTGTTCACAAGAGAGGAGGaggaaaaatttacaaaaagtgtTCAGGCCATGAACAAGTGGGGTTTTGGTTTATCCAAAAAGGAATTTCTTGGGACATTGGGACAGTATATCCTAGTAAATAAAATACGGACTCCTTTCAAAGATGGTATTCCTGGGGACACTTTATGGCGACACTTGCACGAATTGTGGACTATTCCATGTTGCCAACATGTAGCATGTTGA
- Protein Sequence
- MVRNYQKKRPPPPYSKEDLKKAIDAVRKELLTLAAAARVFSIPYPTLFKQYKKQRGVKSTTGGRRTVFTREEEEKFTKSVQAMNKWGFGLSKKEFLGTLGQYILVNKIRTPFKDGIPGDTLWRHLHELWTIPCCQHVAC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00883813;
- 90% Identity
- -
- 80% Identity
- -