Ldol037823.1
Basic Information
- Insect
- Leptopterna dolabrata
- Gene Symbol
- -
- Assembly
- GCA_954871275.1
- Location
- OX940977.1:61572852-61578516[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-05 0.0044 18.8 0.0 4 45 83 123 80 123 0.94 2 2 1.5e-07 4.2e-05 25.3 0.0 9 40 156 187 150 191 0.91
Sequence Information
- Coding Sequence
- ATGTCCGAAACGTCACAAGTTAGGAGGAGGAAAAGAAAACTGAATGTTCCTCCTGGTAGGAGTGTGACAAGCATGGGTGACAAAGAATCTGAGGATGAGGATACAAATGACCATATTCAGGACAATGAGAGCAGTGATGCCCCAGAAGCCGAAGTGGGGGACGCAGCAGCCAGAGACAGAGATGATACTAGATTGAATGCAGCCATGCCACCTATCAAAGGTCAAATGTGGAAGTACACAACCCAGCAAATGGCAGATGCTGTGAAAGAAGTACAACTCGGTACACCAGTTGCCACAGCAGCAAAACGCCACGGAGTTCCTCGCATCTCTCTGCTGTACAAGGTGAGAGGGAAAACTCCTCTTGAAAGGAGGATACGGCGACGTTCAGTGCTGAAGAAGATGCCTCGAAAATATGTTGCAAAGAACATTCCTAAGAAGTACAGCACTGAGTTACTGGACCAAGTACTTGAAGACATTCGTCGAGGTACTATGACTGCCCACAGAGCACACCAGCTTTATGGCATTCCGAGGATGACGCTGTATTCAAGGCTTAACGGTACTAGAGGTAAGGAAAAAGGTTGTGTTCGAGGTAGAACGACTGCGATTCCAGCAGCTGAAGAAGAAAAACTCGCTTCGGCTTTGAAGACAATGGAAAAATGGGGTTTCGGTTTGTCAAGAAAGGAAGTGTTGGAAGTAGTAAAGTTGTATGTTGAGTCAAACAAAATGAAAACCCCTTTTACTGACAACCGCCCAGGTGAAGACTGGTTCCTTAACTTCAAAGCTCGTCATAGGTTATCAATAAAAAAACCTGAACCCCTGGAATATGTAAGGAAAAAGATGACCGATCCGTTTGTAGTGGGAGAATATTTTGACTTGTTGGAAGGACTTTTGACCCAATATAAACTGCATGACAAGCCCCATTTGATATGGAATTTAGATGAGTCATCATTTTGCTCTGACCCTTCACGCACCAAAGTTGTTGGTGCCAAGAACACTCCCTCATCCCGTATTACTAGTGGAGGGGGGAAAGATAATACGACAGTACTGGCAGCATTTAACGCAGATGGCTCAAAGGCTCCTCCCCTCATAATATTCAAAGCTAAAAATGTCTGGGATGAATGGTTAGCTCCTGTAGGATCAGGGTATCCAGGGACCTCATACACAGCAAGTGACAATGGCTGGATAACGActgaaatattcaaaaattatttcaagAAACATTTGATACCTGCACTAGGGTCAGAGAGACCAGTGTTGGTAATTTATGATGGGCATTCCACTCACGTTAGTCCTGAAGTGATTGAAGAGGCTCTGAAAGAAAATGTCATTATTCTCAAACTCCCTCCCCACACTACACATTTTCTGCAGCCATTAGACAAGGCAGTATTTCGTTCGTTCAAAGTTAAATGGGACGAAAAACTCGTCACTTggcaaagaaaaaatttaggaCGGAAAGTAAGCAAAAAAGAGTTTTCAATCATGTTGGGACAGACATGGTTACAGTTGTCAGACGATATAATAAAAAGTGGATTTGAGGGATGTGGCATCAGCCCTTTCAACCGGGATGTAGTTCCAAGAAACAAATTTCACCCTCAAGCACTGGAAAGATGGGACCGCCATCAACAAAGCTTACGAGAAAACATTTCAGATCCCCCCACACCTTCCACTTCGACTCAACCTGTGCCACAGTCAGGACCTACCATCCTACATACTTCAGTGGAAAATTCATCGTTAGCTTCTATCAAGAACCACAGTTCAAGCAGCAAACAGAGTTTTGAAGATCTTCTTCTCGATTGTGTGAAACAGACGCCAAAAGAAACCTctaccaaaaagaaaaaaaaggtagcaaacGGGGCTGAAGTGGTCACAACTGAAGAAACATTGAAAAGAATGCGAGAAGAAGCTGAGGCTGCTAGAGAAGCagaggagaagaagaaggaaaagaaGAAGAGGCAAACAGCagagaaaaatcaaaataaaagaCAGAAAAAGAAAGCCCCATCTCCTGAAACCTCGGATGATGAAATGAGTAGAATTAGTGACATCAGTGTTCGGAGCGAAAACGACCTGCCTAGTGATCCAGAAGAATGGTTCACTGCCCTACCTGATTAA
- Protein Sequence
- MSETSQVRRRKRKLNVPPGRSVTSMGDKESEDEDTNDHIQDNESSDAPEAEVGDAAARDRDDTRLNAAMPPIKGQMWKYTTQQMADAVKEVQLGTPVATAAKRHGVPRISLLYKVRGKTPLERRIRRRSVLKKMPRKYVAKNIPKKYSTELLDQVLEDIRRGTMTAHRAHQLYGIPRMTLYSRLNGTRGKEKGCVRGRTTAIPAAEEEKLASALKTMEKWGFGLSRKEVLEVVKLYVESNKMKTPFTDNRPGEDWFLNFKARHRLSIKKPEPLEYVRKKMTDPFVVGEYFDLLEGLLTQYKLHDKPHLIWNLDESSFCSDPSRTKVVGAKNTPSSRITSGGGKDNTTVLAAFNADGSKAPPLIIFKAKNVWDEWLAPVGSGYPGTSYTASDNGWITTEIFKNYFKKHLIPALGSERPVLVIYDGHSTHVSPEVIEEALKENVIILKLPPHTTHFLQPLDKAVFRSFKVKWDEKLVTWQRKNLGRKVSKKEFSIMLGQTWLQLSDDIIKSGFEGCGISPFNRDVVPRNKFHPQALERWDRHQQSLRENISDPPTPSTSTQPVPQSGPTILHTSVENSSLASIKNHSSSSKQSFEDLLLDCVKQTPKETSTKKKKKVANGAEVVTTEETLKRMREEAEAAREAEEKKKEKKKRQTAEKNQNKRQKKKAPSPETSDDEMSRISDISVRSENDLPSDPEEWFTALPD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01023798;
- 90% Identity
- iTF_01023798;
- 80% Identity
- -