Ldol021964.2
Basic Information
- Insect
- Leptopterna dolabrata
- Gene Symbol
- -
- Assembly
- GCA_954871275.1
- Location
- OX940975.1:14725881-14731340[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.6e-08 1.3e-05 26.9 0.0 5 44 1 40 1 41 0.87 2 2 1.2e-10 3.2e-08 35.2 0.0 2 41 292 330 291 334 0.92
Sequence Information
- Coding Sequence
- ATGCATCGAGCTATCAACGCCGTGAAAGGTGGTATGCCAATGCAGACAGCTGCAAAAAACTTCAATGTGCCTAGAAACACGTTGAAACGCCGGGTTTTAAATAAGAACCAGCATGCTAAGCAAATAAACAAAGTTCTTGACCACTACCGTCCTGTTTTCAATGAAGAACAAGAACAGCAGCTTTTACAACATCTTTTAGAAATGGAGATAGGGGAGTCATTTTTAAGTGCTGCTACTCCTACTGTTGCGGTTAAGGGATTTAGAAGGTGTGGCATAGTGCCAATCAACAGAGATGTGTTCACTGATGCAGATTTTATTGCTTCTACAACAACGGAAATTCCCAATCCATCTCAGTCACACCCAACAGCTGACATCAATCCAGTTTCACTGGACCCTGATAAAGAAGGATCTGCTGATGCCGATCCCAATGCAAGTGGAACATCATGGCCTGTTGATCCCGATCCCGAAGCAAGCACAACCTCAGGGCCTATATTAGGTTCCGGAGACCCCACAACATTAGATATTATCCCGATTCCAAAAACAAACATcatcaaaagaaaaaataagaGAAAAAAGGGTTCGGCTGCAGTTTTGACCGCAAGCCCTTACAAGGCTGAACTTGAAGCAGCGAAGGCAGAAAAGGAAGACAAAGAAAGACTGAAGAGAATCAAACTAGagaaaaaagaggaaaaaaagaaGTTGGCGAACAAGAAAAAGAAACCAGCTGTCAAAGAGCAAACCAAAAGTGGAAACCAAAAGTGTATTATTTTCGACATCGGGCAAAGTGGCCACCCTGTGGCCATTTTGCCCTACCCCATCGGGCAAAATGGCCATTTGaATATTCCTACGGCTGCCAAGATGTTCAAGTATGCTCCAGAAGATATGCAAAGAGCCCTTGATGACGTTCGAAAGGGGATGAGTGTAGCGGGTTCTGCCCGTAAATATGGGGTTCCACGAATAACCCTACTATACAAAGTCAGAGGGAAGCACCCGGAAGAGCGTAAAATGGGACCACCATCTATTCTTTCTAGTCAAGAAGAGAAATTATTGGAAATGTGGATTAAACACATGGCGAACATTGGTTTTCCTGTTACCAAAGACCAAGTTATTGATAGCGTTGAACATATCATGAAAGGATTGAATCAGGAAAATCCCTTCGTAAATGGTCGCCCTGGCCGCAGGTGGTATGAGCTTTTCATGAAAAGGAACCCAGACGAAAAGGAATTCCTCACGGTTTTGCTCTCTGCTAGTGCTGCAGGTGTTTTTTCCCCACCTTCCATAGTGCTCAAATATGAGCGCATACCATCTGACATAGCTAACAGCATCCCACCATCCTGGGGGATTGGGCGTGCTCCCGCACACTCATGGAGAAATAAAGTGCAGCAATGGAGGCTCGAGCATATCGATGACCCTATTCTTAAAAGGAAGCATTTTGTCCCCCTACTAGAGAAAGCTTTAAGGGAAGTTCCACCATCAGCAGTCATCAATGGTTTCCGGAAATGTGGGTTTGTGCCATGGAACCCAACAGCAGTGCTTTCCTCCGCCTCAACGTCGCAAGACAGTGGTGACATCCAGAAAATGAGAATGGATATTTCAACGTCACAACTCAAAAAGAGAGAGGATGAGGAAAACAAGAAGAAGAGAGCTGAGGAAAGGTTGAGGAAGAAGCAAGAAAAAGAAGAGTTGCTGAAGAAGTCAAAGCAAAAGAAAACTGGCAGAGCAGGAAAGAGGAATGGAAGGAAGAAGAGTACGAAGCAACAGTCATCGTCCAGCGAAGAAGAATGGATTCCATCGGAGGGTAGTGAAGATGAATATGAGTGCGCAAACGTTACTGAATCTGAAGCTTCAGTCGAAGTCGAACAACTGTGTGACGGTGACGGGACTATTGGTGTAGAACAAGATAACCTGCAACTCCCCAATGTAATACTCGTATCAATGGATCCTGAAGCCTCAACAGAAGTCGAGTGA
- Protein Sequence
- MHRAINAVKGGMPMQTAAKNFNVPRNTLKRRVLNKNQHAKQINKVLDHYRPVFNEEQEQQLLQHLLEMEIGESFLSAATPTVAVKGFRRCGIVPINRDVFTDADFIASTTTEIPNPSQSHPTADINPVSLDPDKEGSADADPNASGTSWPVDPDPEASTTSGPILGSGDPTTLDIIPIPKTNIIKRKNKRKKGSAAVLTASPYKAELEAAKAEKEDKERLKRIKLEKKEEKKKLANKKKKPAVKEQTKSGNQKCIIFDIGQSGHPVAILPYPIGQNGHLNIPTAAKMFKYAPEDMQRALDDVRKGMSVAGSARKYGVPRITLLYKVRGKHPEERKMGPPSILSSQEEKLLEMWIKHMANIGFPVTKDQVIDSVEHIMKGLNQENPFVNGRPGRRWYELFMKRNPDEKEFLTVLLSASAAGVFSPPSIVLKYERIPSDIANSIPPSWGIGRAPAHSWRNKVQQWRLEHIDDPILKRKHFVPLLEKALREVPPSAVINGFRKCGFVPWNPTAVLSSASTSQDSGDIQKMRMDISTSQLKKREDEENKKKRAEERLRKKQEKEELLKKSKQKKTGRAGKRNGRKKSTKQQSSSSEEEWIPSEGSEDEYECANVTESEASVEVEQLCDGDGTIGVEQDNLQLPNVILVSMDPEASTEVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -