Basic Information

Insect: Leptopterna dolabrata
Gene Symbol: pol
Assembly: GCA_954871275.1
Location: OX940984.1:40114235-40131338[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 3.2e-12 8.8e-10 40.2 0.0 1 39 700 739 700 743 0.90

2 4 4.2e-11 1.2e-08 36.7 0.0 1 39 754 792 754 795 0.95

3 4 2.5e-16 6.8e-14 53.4 0.0 2 45 810 854 809 854 0.98

4 4 1.5e-16 4.2e-14 54.1 0.1 1 43 861 904 861 905 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	3.2e-12	8.8e-10	40.2	0.0	1	39	700	739	700	743	0.90
2	4	4.2e-11	1.2e-08	36.7	0.0	1	39	754	792	754	795	0.95
3	4	2.5e-16	6.8e-14	53.4	0.0	2	45	810	854	809	854	0.98
4	4	1.5e-16	4.2e-14	54.1	0.1	1	43	861	904	861	905	0.95

Sequence Information

Coding Sequence: ATGTCATTGTGTTCTCTGCCTCTCGGATGCACACATAATACTAGTCATTCTGCTAGTGCTATAGATGTAATTGTTGTGAACGATACGAACAAAGTAGAAGGATTTTCCAAATTCGATGTCCCAGGTGTCTCTCAGCACAACCTCATTGTTGCCTCTCTTAAAATCGCTCCTCCTAAATTGAAGAAACAGATAATTTATGCACGTTCTTTTAAATCTGTCAATGAGGGAGATCTCTTGAGGCGATGTGAGGCACTGCCTTGGTCATCAATTTACTCTCTGTCTGATGTTAACAATATGCTAAGTCTCATAGTTTGTCTTCTACTGACTGTACTTGACCAGTTCGCTCCAAAACGTAAAATCAGGTTAAAACATCCGTCTACTCCTTGGTTTTCGGAAGAAATAAAGCGAAATATAAAACTCAGAGATAAACTACATACCAAATGGAAAGAGGGTGGCAAGCGCGAGGCTGACTGGGAAGCTTATAGGGTTCAGCGAAACAAAACCAAAACTCTCGTTAGAAATGCCAAGAggttgaatattgaaaattcttTGGATCCTAAACTATCATCCAAAGTACTCTGGAATAATCTGAGGAAGCTGGGATTGGTGGGGAGGGAGTCAAAGGACGATGGTGTAGTTGATTTCAGCTTAAACGAAATTAATTGTCATTTTTGTGCCAACCAACCTGCTTCAGCTTTGAGTACCATCACTGATGACTGGGATGGATTCTCGTTTCACAACGTAACGGAAGATGATGTTTTCTCATCTTTCTGTGTGGTTACCTCTAATGCAGTTGGATCTGATGAAATCCCATTGAACTTTATCAAAACACTTCTTCCTGTTATCTTGCCATTTGTGACTCACTTCTTTAATTTCTGTCTAACATCCTCTACCTTTCCTGATGGCTGGAAGCACGCTCTCGTTCTCCCTCTAAATAAAATCAGTAAGCCCAAATCATTAAGTGATCTGCGTCCCATTTCCATCCTGCCAGCTTTCTCTAAACCTTTGGAAGTCCTAATCAATAATCAGTTACTAGAATATTTAAATGTAAATAACATGTTGAGTCCCTACCAGTCTGGGTTCCGAAAGGGGCACAGCTGTATAACGTCTCTGATCAATATTACGGAGAGTGTTAGGGAGGGGTTTGAGCTTGGCCAAATTACCATCCTGGTCCTCCTTGATTTCAGCAATGCCTTTGGTTCCTTGGATTTCGGTGTGTTCATTAATAAATGCCGAGATGAATACAACTTGAGTTCATCTGCCTGCAAGCTGCTGCTATCATTTTTGACAGGTCGTACCCAGGCTGTTGTATCTGGCGGTGAAGTCTCTTCTAGCTTACCCCTCACCGCAGGAGTTCCTCAAGGTTCGGTATCAGGCCCTCGTATTTTCTCTATGTATGTAAATGACTTCAGTGCATGCCTCCGAAATTCCAGAACTCATCAGTTTGCGGATGACATTCAGGTCTTCTTGCGTTGTGCACCCGGTGACCTGGACCAGGGCATTGCTCTGATGAATGAGGATCTGAGACGCATTCAACAATGGGCTGACGCAAATTTCCTTCGTTTGAACCCCCTGAAGTCCCAGGCTATGATTTTTTCTATTAAACCTTGTGACACTACTAAGTGCCCATCCTTACTTTTAAATTCAGTCCCAATTCCATTCTCAGATAGGGTTCCTGTACCAAATGAAGTGAACCAGTCAACACAGGTGGAAGTGGAAATGACTGGGACGCCTGCAGCACCATCTGCAACCTTGGTCACGACGATGGACCTTCAACCTTCTGATACCCCAACCACCCATAGGGATATTGCCATTGACTCAAGCGATCTTGGTGTTGAAGAAAATGGAGTCAAAGTCAAATTCGAGACTCTCAGGTCAATTGACCAAGTCGACCACATGGAAATGGACGCTCACATGACCAATGGGGCGGTTCAGGCAAATGTTGAAGACGACCCATCGATGCATACCATGATGATCACCCCTGAACTTCTCGGGCTCATTCCTTCTTCAAATTCTGAGAGCAGTGATATGGACCATTCCAAATCCTCGATGAATGCCCTCAATTCCAACACCATGTTGTCTGGCGGCAAAACATGGACGAAAGAAGACATGGACGCAGCGCTGGATGCTTTGCGGAAGCAGACGATGTCTCTTAGCAAAGCGTCTGCTCATTACGGGATCCCTTCGACCACGTTATGGCAGAGAGCTCACCGGCTGGGAATAGATACTCCTAAGAAAGACGGACCTGCTAAATCCTGGACAGAAGACAATTTGAATACGGCACTTGATGCTTTACGGCAAGGATCCATATCAGCCAACAAGGCCAGCAAAGCTTTCGGCATCCCAAGCAGTACGCTCTACAAAATCGCACGAAGAGAAGGCATCAGATTGGCAGCACCCTTCAACGCGGCACCCACCTCGTGGGTCCCTGAAGACCTTGAGAGAGCTCTGGAGGCAATTCGTTCGGGACAGTTCACCGTTCAAAGGGCTGCGACGGAGTATGGCATACCCTCCGGCACACTGTACGGGAGATGCAAACGTGAAGGTATTGAGCTCTCAAGGAACAACCCCACACCCTGGTCAGAGGACGCCATGATGGAAGCTTTGGAAGCCGTCAGGATAGGGCAGATGAGCATCAACCAAGCGGCCATCCACTACAACCTACCTTACTCCTCTCTCTATGGCCGGTTCAAACGCGTCAAAAACGAAGCTGACGGTCTCTCGGGAAGTGAAACGGACAACTCTGAACAAACAGCGGTCCTCGCCCCATCACAGcctcctgcgcatgcgcacacgcagCCACAGATCATGCTCGTCCAGTACCAACAGCCTCTCCACATGTACCAGTCCGCCACATGA
Protein Sequence: MSLCSLPLGCTHNTSHSASAIDVIVVNDTNKVEGFSKFDVPGVSQHNLIVASLKIAPPKLKKQIIYARSFKSVNEGDLLRRCEALPWSSIYSLSDVNNMLSLIVCLLLTVLDQFAPKRKIRLKHPSTPWFSEEIKRNIKLRDKLHTKWKEGGKREADWEAYRVQRNKTKTLVRNAKRLNIENSLDPKLSSKVLWNNLRKLGLVGRESKDDGVVDFSLNEINCHFCANQPASALSTITDDWDGFSFHNVTEDDVFSSFCVVTSNAVGSDEIPLNFIKTLLPVILPFVTHFFNFCLTSSTFPDGWKHALVLPLNKISKPKSLSDLRPISILPAFSKPLEVLINNQLLEYLNVNNMLSPYQSGFRKGHSCITSLINITESVREGFELGQITILVLLDFSNAFGSLDFGVFINKCRDEYNLSSSACKLLLSFLTGRTQAVVSGGEVSSSLPLTAGVPQGSVSGPRIFSMYVNDFSACLRNSRTHQFADDIQVFLRCAPGDLDQGIALMNEDLRRIQQWADANFLRLNPLKSQAMIFSIKPCDTTKCPSLLLNSVPIPFSDRVPVPNEVNQSTQVEVEMTGTPAAPSATLVTTMDLQPSDTPTTHRDIAIDSSDLGVEENGVKVKFETLRSIDQVDHMEMDAHMTNGAVQANVEDDPSMHTMMITPELLGLIPSSNSESSDMDHSKSSMNALNSNTMLSGGKTWTKEDMDAALDALRKQTMSLSKASAHYGIPSTTLWQRAHRLGIDTPKKDGPAKSWTEDNLNTALDALRQGSISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTSWVPEDLERALEAIRSGQFTVQRAATEYGIPSGTLYGRCKREGIELSRNNPTPWSEDAMMEALEAVRIGQMSINQAAIHYNLPYSSLYGRFKRVKNEADGLSGSETDNSEQTAVLAPSQPPAHAHTQPQIMLVQYQQPLHMYQSAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -