Basic Information

Insect: Leptopilina syphax
Gene Symbol: -
Assembly: GCA_032872505.1
Location: CM065470.1:32567836-32601782[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.31 60 5.7 1.3 1 20 74 93 74 95 0.89

2 15 0.026 5.1 9.1 4.2 1 17 111 127 111 131 0.91

3 15 0.00012 0.023 16.5 2.8 1 21 138 158 138 159 0.94

4 15 1.1 2.1e+02 4.0 1.2 2 21 199 218 198 222 0.86

5 15 0.00023 0.045 15.5 3.1 1 20 235 254 235 256 0.95

6 15 6.8 1.3e+03 1.5 0.5 1 10 372 381 372 393 0.87

7 15 0.0021 0.4 12.6 3.5 1 19 409 427 409 430 0.94

8 15 4.1 8e+02 2.2 2.6 3 21 475 493 473 494 0.88

9 15 0.01 2 10.3 1.9 1 21 510 530 510 531 0.93

10 15 0.023 4.5 9.2 3.5 1 21 603 623 603 624 0.93

11 15 0.0058 1.1 11.1 1.2 1 21 704 724 704 725 0.93

12 15 1.4 2.7e+02 3.6 2.4 3 21 770 788 768 789 0.88

13 15 2.2 4.3e+02 3.0 1.9 1 22 895 916 895 916 0.89

14 15 0.00024 0.048 15.5 1.1 1 21 932 952 932 953 0.95

15 15 0.00017 0.032 16.0 1.1 1 22 959 980 959 980 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.31	60	5.7	1.3	1	20	74	93	74	95	0.89
2	15	0.026	5.1	9.1	4.2	1	17	111	127	111	131	0.91
3	15	0.00012	0.023	16.5	2.8	1	21	138	158	138	159	0.94
4	15	1.1	2.1e+02	4.0	1.2	2	21	199	218	198	222	0.86
5	15	0.00023	0.045	15.5	3.1	1	20	235	254	235	256	0.95
6	15	6.8	1.3e+03	1.5	0.5	1	10	372	381	372	393	0.87
7	15	0.0021	0.4	12.6	3.5	1	19	409	427	409	430	0.94
8	15	4.1	8e+02	2.2	2.6	3	21	475	493	473	494	0.88
9	15	0.01	2	10.3	1.9	1	21	510	530	510	531	0.93
10	15	0.023	4.5	9.2	3.5	1	21	603	623	603	624	0.93
11	15	0.0058	1.1	11.1	1.2	1	21	704	724	704	725	0.93
12	15	1.4	2.7e+02	3.6	2.4	3	21	770	788	768	789	0.88
13	15	2.2	4.3e+02	3.0	1.9	1	22	895	916	895	916	0.89
14	15	0.00024	0.048	15.5	1.1	1	21	932	952	932	953	0.95
15	15	0.00017	0.032	16.0	1.1	1	22	959	980	959	980	0.95

Sequence Information

Coding Sequence: ATGGACAAAGTTGGAGGCTGCATAATATTCTTTAGTCATGGAGCAGACGAATCAATTTCATTCTTCAAAGCAGAAAGCAGCCATCAGATAAAAAATAACGGGTCAAAGGAAAATACATTCTTCAATGGTCAGTGTAGATTTCAAAGACAGCATTTATCGATGCTGTCCGTGAAAAGTATGGAGCAACTGACACCGCCACCACAAAATCAAGAGGACGGATTTTTTTGTCGCTTTTGCGGGAAAAATTTCGGTCGAATAAGTGGAAGGACACATCATGAAAATTTATGCACACGTAATCCGTCGAGCAGTCAGCCGAAAGAATTATTTGCGTTTAGCTGCGACGATTGTGGTTGTAGTTTTAAACATAAATGGGAATTAAATTGTCATGAGGCCTATGATTGTGGCGTGACACACAGATGTAGAATTTGTAACAGAACTTATTCGCGATTATATAATTTACGGGCACATTTTCGTAAAGGTCTTTGCAAAGCTAATCGTGAAATGTTTCAggagcaaaaatttttatcagttaGAAATTTCGATTTTCTGACGGCAACCGAAGAGTACGATGACAACATGGAAATGTACACGTGGAAGTGTCAATATTGTGGAATGAGTTTGGGAACAATAAGTGGAAAGACTAGGCATGAAAATAACTGCTCACATAATCCGTCAATTAGAAGAGAGAAGAAGAGTTGGAAGTTTAGTTGCAACAAATGTGGACATAATTTCAGTCGCAAACATTATTTGTCTAGTCATATTGCTTACGATTGCGGCAGAACACACAAATATTTCTCATCGTTAACGACAAATTTGCCACTTCTCAGAGTTAAAGGATTTGAAGAATTAAATCAATTGCGAGCAGTTCAGAACGATAAGGAAACGATTTCCTGTAGTTTTTGTAAACAGAATTTTGGACGTATAAACAGAAAGAAAGCCCACGAAAATTACTGCGCTCGAAATCCAAAAGTCAGTGAAGGAATGTTACGTTCACGAttttgttgcaaacaatgtggAATTAAAGAGAAGATCTCGAAACAAATGCCAGTTCTAACAATAAAAAGTATTGAATATCTAAATTCATTACAAGAAGTTAATGAAAATATAGACATCTATTCATGCCGCTTTTGTAATCGAAATTTCGAATTAGGACGTAGAAGGAAACAACATGAGAAAACCTGCACTCGTAATCCAATGATTGACGAAAGCATATTATGCGACagattttgttgtaaaaattgcGGCAGCAGCTTCAAACGAAAAAGCAGTTTATACACCCATTCAGCATCTAATTGTGGCAACACATCCAAGTGCAAAAAAGATGAGAAAGAGATGGCCAATGAAATGCcagttttaaaaacaaaaggaaTTGAACATCCAACTCCATTGAAAGAAGATAATGACAATATAAAAATCCATTTATGTCGCTTTTGTAATCGAGAGTTTAAAGTTAAACATAGAATGGACCGACATGAAAAAATCTGCACTCGCAATCCAACGATTGACAAAAGCATATTTCGCGACCGATTTTGTTGTGACAATTGTGGCAGCAGCTTCAAACAAAAACAGGCTTTAGACGtccataaaaaatcaaattgttgCAACACACCCAAGTGCAAAAAAGATATTGTTGTGACAATTGTGGCAGCAGCTTCAAACGAGAAAGCACTTTATACGCTCATGAAACATCCAACTGTTGCAAAACCTACGAGTGCAAAAaagTTTGGACAAAAAGCTGGAAAGAATAAACATGAAAGATTCTGCACTTGCAATCCAATGATTGACGAAAGCATATTACGCGACAGATTTTGTTGTGACAAGTGTGGCAGTAGCTTTGAACATAAACGTACTTTATACGCCCATGAAAAATCAAATTGTTGCAACGCACCCAAGtgcaaaaaagttaaaaaagACATCATCAATAAAAGGCCGCTTCTAAAAGTAAAAAGAATTCAACATCCAACTCCATTAAAAGAAGTTAATGACAATATAAACATCCATTTATGCCGCTTTTGTAATCGAAAGTTTAATGTTAAAGCTAGAAAGGACCAACATGAAAAATTCTGCACTCGCAATCCAATGATTGACGAAAGCATATTACGCGACCGATTTTGTTGTGACAATTGTGGCAGCAGCTTCAAACAAAAACAGGCTTTAGACGCCCATGAAAAATCAAATTGTTGCAACACACCCAAGTGCAAAAAAGATGAGAAAGAGATCACCAATGAAATGCCAGTTCTAAAAATACAAAGAATTGAACATCCAACTCCATTAAAAGAAGATAATGACAATACGAACATCCATTTATGCCGCTTTTGTAATCGAAAGTTTGAAGATAAAAGTAGAAAGAATAACCATGAAAAAATCTGCACTCGCTATCGAAAAATGAAGAAGAGAATGTTACGTGGTAGATTTTGTTATGGAACGGTGATAACGGCAAATATGCCGCAACTTACTGTAAGAAGAATAGAACAGCTAAACACATTGGAAGATGAAAACAAGAATGGAACGGTGAAAACGACAAAAATGCCGCAACTTACTGTAAGAAGAATAGAACTGCTAAACACATTGGAAGATGAAAACAAGAACGAAACGTGGATTACAATCGAAGAGGCGCTTTTGAAAGTGAAAAATGTTGAACAACTACTACGATCAGAAAAAGCTAGTGACAGTGTAGACATCTTTTTGTGCCGCTATTGTAGTCAGAAGTTTGGACAAAAATTTAAGAGAACAGTTCATGAAAAAACCTGCAGTCGTAATGGAAGAATCAAAAAGGACATGTTACAGTCTCAATTTTATTGCGACCAATGTGGCAGTCAATTTAAGCAGGAAAGAAGTTTAAAGAGACACATGCTTCATGATTGTGGCAAAACGCACCAGTGCAAAAAGTGTGGCAAAATTTTTGGAACACTACGTACCTTGAATTTGCATGTTCGGAAATGTCGTACTGCAAAGGACAAGAATGGTTGA
Protein Sequence: MDKVGGCIIFFSHGADESISFFKAESSHQIKNNGSKENTFFNGQCRFQRQHLSMLSVKSMEQLTPPPQNQEDGFFCRFCGKNFGRISGRTHHENLCTRNPSSSQPKELFAFSCDDCGCSFKHKWELNCHEAYDCGVTHRCRICNRTYSRLYNLRAHFRKGLCKANREMFQEQKFLSVRNFDFLTATEEYDDNMEMYTWKCQYCGMSLGTISGKTRHENNCSHNPSIRREKKSWKFSCNKCGHNFSRKHYLSSHIAYDCGRTHKYFSSLTTNLPLLRVKGFEELNQLRAVQNDKETISCSFCKQNFGRINRKKAHENYCARNPKVSEGMLRSRFCCKQCGIKEKISKQMPVLTIKSIEYLNSLQEVNENIDIYSCRFCNRNFELGRRRKQHEKTCTRNPMIDESILCDRFCCKNCGSSFKRKSSLYTHSASNCGNTSKCKKDEKEMANEMPVLKTKGIEHPTPLKEDNDNIKIHLCRFCNREFKVKHRMDRHEKICTRNPTIDKSIFRDRFCCDNCGSSFKQKQALDVHKKSNCCNTPKCKKDIVVTIVAAASNEKALYTLMKHPTVAKPTSAKKFGQKAGKNKHERFCTCNPMIDESILRDRFCCDKCGSSFEHKRTLYAHEKSNCCNAPKCKKVKKDIINKRPLLKVKRIQHPTPLKEVNDNINIHLCRFCNRKFNVKARKDQHEKFCTRNPMIDESILRDRFCCDNCGSSFKQKQALDAHEKSNCCNTPKCKKDEKEITNEMPVLKIQRIEHPTPLKEDNDNTNIHLCRFCNRKFEDKSRKNNHEKICTRYRKMKKRMLRGRFCYGTVITANMPQLTVRRIEQLNTLEDENKNGTVKTTKMPQLTVRRIELLNTLEDENKNETWITIEEALLKVKNVEQLLRSEKASDSVDIFLCRYCSQKFGQKFKRTVHEKTCSRNGRIKKDMLQSQFYCDQCGSQFKQERSLKRHMLHDCGKTHQCKKCGKIFGTLRTLNLHVRKCRTAKDKNG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -