Basic Information

Insect: Leptopilina syphax
Gene Symbol: Glis3
Assembly: GCA_032872505.1
Location: CM065468.1:22499945-22505287[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.00087 0.17 13.7 0.0 1 23 303 328 303 328 0.97

2 5 0.04 7.7 8.5 0.6 1 23 367 393 367 393 0.94

3 5 2.4e-06 0.00047 21.8 0.8 2 23 400 423 399 423 0.97

4 5 9.1e-05 0.018 16.8 2.3 1 23 429 453 429 453 0.96

5 5 1.7e-06 0.00034 22.2 0.4 1 23 459 483 459 483 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.00087	0.17	13.7	0.0	1	23	303	328	303	328	0.97
2	5	0.04	7.7	8.5	0.6	1	23	367	393	367	393	0.94
3	5	2.4e-06	0.00047	21.8	0.8	2	23	400	423	399	423	0.97
4	5	9.1e-05	0.018	16.8	2.3	1	23	429	453	429	453	0.96
5	5	1.7e-06	0.00034	22.2	0.4	1	23	459	483	459	483	0.95

Sequence Information

Coding Sequence: ATGCATTTGGAGAAAATTTTGGGATTATTGAATGAAGAGAATTCTAGTGATAGTACAATGAAACGAGAAAGTGAGAATTTCACATTTTCCGGAACATCATTGGGCTCCATTTCTGGAGAGTGGACGTCACAAATGGAGAATTCAACCCTTTCGCCATTAATGCTGAGTCCAAAGGCAGAGGAAATTAATGAATGGGATCAGATAAGTTCAATATTTCAATATCCCACGGATCCCTATTATTCCGAAACGGGAAATCTCTATTCACCGGGCAGTACCGGAAGTGAAGTTTCAACTCCAACATGGGGCAGTGGCTATCATAAAAGTGAATACGGTGAATTTTCCGACGAAGTGCTGAGGAATCAACGATTGCCACCGGTCGAGACGGTGTTTTCATTCTCGAGGCCTTTTGGAAGCCAGATTTCCGATTTTTCCAATTCTCAGATATTTGAGGAGATCCAAGAGCCTCAGGAATCACAAAATTTGAATCTACAATTTCAGGAGATTCTGAACGATACAAATACAAATGACAGTTTGCAAATAATCGAAGAATTCGATTTGGGTTTAATTCGAGGTGATCCAACGACTTTGGTGACGAATTTAGATCTGTCAAAAGCGGGAAATTCCGCTTATCATGAGTTGACAGAGTACACGGAAATCGTCAATGACACATCATCATCGTCCTGCTACGCCGTTGGTCATCTTGTTTCGTCCCAACAATCATCACTGCCAACCAATTTCAAACACAATAATATTCAAGACTTTCAAATTCAGAATATTGACAATCAAATTGTCCTGCCGAGGAATGAAGGTCTTCTGATTGCCAACAATCATCGACGGGTCCCGTCTTTGAAAGTGGAGAACTCGCCGAAACGAGAAGATTCCTATGgtGAGAGACAAAATGAGGAGTATCGTTGTCAGTGGATTGATTGCGGAAGTGTTTTCGCCGAGCAAGAGGGTTTGGTGCGACACATTGAGAAAAAACATGTTGAATCATCGTCTTCACATTCCCATGTTCACAGTAGAAGAAGTCACAAGGATCGAAGCGATAAGGATAAGGATAATAATGCGAATAATTCAAATTCCACCGGACAGGATGAATTCACGTGCCATTGGCAAGGATGTCCTCGGGGGCGTCCTTTCAACGCTcgttacaaattattaattcacaTGAGGGTCCACAGCGGCGAAAAGCCAAATAAATGCCCAttttctggcTGCACGAAGGCGTTTTCTCGActggaaaatttgaaaatccaCCAAAGATCTCATACGGGCGAAAGGCCCTACGCCTGTCAACATCGCGGTTGTTCGAAAGCATTCAGCAACAGCAGCGATCGTGCAAAACACCAAAGAACTCATTACGACACGAAACCATACGCTTGTCAAGTCACCGGCTGCGGTAAACGTTACACCGATCCATCGAGTCTaagaaaacatttgaaaaatcacACGGAAAATTCATCTAATTCATCGTCAAAATCATCGTCGGGATTATCCACGAAAGAATCGTCGTTAACTCGTGTCTATCATGAAACAACGAACGAGGATGTTTTACGATTGGATAATCAACAAGAAATCACGATCAACAACAATGGAAATTATCGAAGTCGAAAGTGTTCCGATGTTCTCGACGACGACAATGTGGAATTGTCTTTAAATTTCGACGACAGCCAACAGGAATTCATTCCCTACGAGTCAGTGAAACGATTTCTCAATCATAGCAATTACAACGATAATATTACAgATTACGACAATTTTCAAGAACTCGAGCCCGATATTGAGCAGCAATTTTTCGATTTGACGAATTTTGAAGAATCGATTTTTATCGCTggttaa
Protein Sequence: MHLEKILGLLNEENSSDSTMKRESENFTFSGTSLGSISGEWTSQMENSTLSPLMLSPKAEEINEWDQISSIFQYPTDPYYSETGNLYSPGSTGSEVSTPTWGSGYHKSEYGEFSDEVLRNQRLPPVETVFSFSRPFGSQISDFSNSQIFEEIQEPQESQNLNLQFQEILNDTNTNDSLQIIEEFDLGLIRGDPTTLVTNLDLSKAGNSAYHELTEYTEIVNDTSSSSCYAVGHLVSSQQSSLPTNFKHNNIQDFQIQNIDNQIVLPRNEGLLIANNHRRVPSLKVENSPKREDSYGERQNEEYRCQWIDCGSVFAEQEGLVRHIEKKHVESSSSHSHVHSRRSHKDRSDKDKDNNANNSNSTGQDEFTCHWQGCPRGRPFNARYKLLIHMRVHSGEKPNKCPFSGCTKAFSRLENLKIHQRSHTGERPYACQHRGCSKAFSNSSDRAKHQRTHYDTKPYACQVTGCGKRYTDPSSLRKHLKNHTENSSNSSSKSSSGLSTKESSLTRVYHETTNEDVLRLDNQQEITINNNGNYRSRKCSDVLDDDNVELSLNFDDSQQEFIPYESVKRFLNHSNYNDNITDYDNFQELEPDIEQQFFDLTNFEESIFIAG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00880004;
90% Identity: iTF_00882479;
80% Identity: -