Lsyp011122.1
Basic Information
- Insect
- Leptopilina syphax
- Gene Symbol
- -
- Assembly
- GCA_032872505.1
- Location
- CM065470.1:32961892-32977002[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00021 0.041 15.7 0.3 1 23 101 124 101 124 0.95 2 9 2e-06 0.00038 22.1 1.8 1 21 134 154 134 155 0.96 3 9 0.0031 0.6 12.0 3.1 1 23 163 186 163 186 0.96 4 9 3.6e-06 0.0007 21.2 0.6 1 21 247 267 247 268 0.96 5 9 0.00037 0.072 14.9 3.3 1 23 276 299 276 299 0.96 6 9 0.0099 1.9 10.4 3.0 1 21 326 346 326 347 0.93 7 9 3.5 6.8e+02 2.4 0.2 3 14 357 368 355 370 0.84 8 9 1e-05 0.002 19.8 0.8 1 21 397 417 397 418 0.95 9 9 0.00014 0.028 16.2 2.1 1 23 426 449 426 449 0.97
Sequence Information
- Coding Sequence
- ATGGGAAACTGCACCAGTGTCACCCCCGTggatgAAGAAATTATTCCAATAACAGAtaaagaagaggaagaagaagacgAAAAAGGCGAAGACGATGAAGAAGAATTAATTCCCCGGAGAAAGACAAGATCaatcacaaataataataaggGGAAAATTGATCAGAAAATAGGGAATAAATCGAAAAGTGAATATGTAGATGATGGGGAAATTGATGATATTTCACATCTCGGCTTTTTTCATCAAGTACAAACAACAACaccaacaacaacaacaacagcagtAGCTAATGACGTTTTATTTCCATGCGATAAATGCGGTGTTCAATTCTCGCGTAGAGATGTACTTTTCGATCATATTTTTAGTGAGCATTTCGATCAAAAATTAAcgcaaaaaaatttcacctgCGAAGTATGTCAAAGAAGTTATGCGTCGCGTAGTAATTTACGTCGTCATCAACGTCACGAATGTAATACCACTCCTTCGTTTATTTGTCCATTTTGTAATCAGGCATTTAAATACGATCATGTACTTCATAGACACATGACTAGTGTTCACGCGGATTTTTTAAgTTTTCCCCTACCACACGTGGAGTTCAACTATTTTTTGCATTCGTCATCGTCGAACGAGAGTGCGAGCGTTTTTGGAGGGAAAGACGGGGTCGAGGGAACAAGTTCAAAATACTATTCGCCATCGAGGACACGAAGTAATTCGGGAAAATCGTCCGAAATGAAACCATTTAAATGTCCAAAGTGTGATCGAACATTTGCCGTTAAGGGCAATATGAATAGACATCTTAAATACGAGTGTAATCAAGCGCCAAAATTCTCCTGTCCACATTGTCATTTTCGTTCGAAGCAAAGTTCCAATGTTTTGGCTCACATTAGAGCACGTCACAactTTACGATACTGGATTCGTTTGTCAGTTATGATCAGCCCGGTGAGAATGTTGATGATGGAACGGggaaaaatttacatttctgTCCAAAATGTAAACGTGGTTTTACATTGAAGGGAAATCGCAATCGCCACTACAAATATGAATGCGGTCAGGAACCACGTTTTGGCTGTCCATATTGCGATCTACGTAGCAAGCAAACGAGTCAAATTTATTATAATTTGGATTCATCGTATCCTTATGAAGATTGTGATTATAAAATGGACCCGTCGAGGAGAATGTACGGCGATTATGTCTGTTCAAAGTGtggaaaattctacaaatcACTAGGAACATTGCAACGTCATTTAAATTACGAGTGTGGTTTGGCACCTCGATTCAAATGTCcctattgtaattattatacgAAGCAAAAGATCAACGTCAAAAAGCATATTATCAGAAATCATATTGACAAATCGATTTATGTTATCGATACAATGAGCACTATCGACATGCCACTTGGTTGCGAATAA
- Protein Sequence
- MGNCTSVTPVDEEIIPITDKEEEEEDEKGEDDEEELIPRRKTRSITNNNKGKIDQKIGNKSKSEYVDDGEIDDISHLGFFHQVQTTTPTTTTTAVANDVLFPCDKCGVQFSRRDVLFDHIFSEHFDQKLTQKNFTCEVCQRSYASRSNLRRHQRHECNTTPSFICPFCNQAFKYDHVLHRHMTSVHADFLSFPLPHVEFNYFLHSSSSNESASVFGGKDGVEGTSSKYYSPSRTRSNSGKSSEMKPFKCPKCDRTFAVKGNMNRHLKYECNQAPKFSCPHCHFRSKQSSNVLAHIRARHNFTILDSFVSYDQPGENVDDGTGKNLHFCPKCKRGFTLKGNRNRHYKYECGQEPRFGCPYCDLRSKQTSQIYYNLDSSYPYEDCDYKMDPSRRMYGDYVCSKCGKFYKSLGTLQRHLNYECGLAPRFKCPYCNYYTKQKINVKKHIIRNHIDKSIYVIDTMSTIDMPLGCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -