Lsyp032591.1
Basic Information
- Insect
- Leptopilina syphax
- Gene Symbol
- -
- Assembly
- GCA_032872505.1
- Location
- CM065474.1:40763204-40780966[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 2.9 5.7e+02 2.6 0.3 1 19 890 908 890 909 0.77 2 16 0.48 93 5.1 1.0 2 23 917 938 916 938 0.95 3 16 0.00043 0.083 14.7 1.7 3 23 947 968 946 968 0.97 4 16 0.0023 0.45 12.4 3.0 1 23 975 998 975 998 0.95 5 16 0.00011 0.021 16.6 0.7 1 23 1004 1027 1004 1027 0.94 6 16 0.66 1.3e+02 4.7 1.2 2 23 1035 1055 1035 1055 0.95 7 16 1.9e-07 3.7e-05 25.2 2.5 2 23 1061 1082 1060 1082 0.97 8 16 7.8e-06 0.0015 20.2 0.3 1 23 1088 1110 1088 1110 0.98 9 16 0.00073 0.14 14.0 2.1 2 23 1122 1144 1121 1144 0.95 10 16 0.032 6.2 8.8 1.7 1 23 1150 1173 1150 1173 0.94 11 16 0.095 18 7.3 5.2 3 23 1196 1217 1195 1217 0.95 12 16 0.0092 1.8 10.5 0.3 2 23 1224 1246 1223 1246 0.96 13 16 0.00014 0.026 16.3 0.6 3 23 1255 1275 1253 1275 0.95 14 16 0.0021 0.41 12.5 2.6 1 23 1281 1304 1281 1304 0.96 15 16 0.37 72 5.4 3.2 2 23 1311 1332 1310 1332 0.96 16 16 0.011 2.1 10.3 2.6 1 23 1338 1360 1338 1360 0.98
Sequence Information
- Coding Sequence
- ATGAGTTACAATTTACGTACAAAAACCAAAACCGGCTCACCGAAAGTCGCACAATTTCACAATTATGCCACGTCAAGTTCATCGTCACAAGCGGAAAAATCATCATTCACCCCCGTGACAAATATCAATgatctgaaaaaaattacccCTCGGGTTAAAGTTCTAAATCAAGAAACACCCACTTTACAATCTTTACGAAAATCGAGTCTTGAATCCCCGAATTTTCCATCGCCGAAGAAATTGAGTAGTCAAGAATCTTCAAATTCCTTTCAATCCTCCTCGAGAAAATCAAGTCAAGAATCCCAATCGTCGAGAAAATCAACAAATTTATCGCTGACGAGGAAAGAGACAAAATCAAATCAGAagacaataattttatcatcGCCGGAGAAAAATGACGACGAGACGGAAATAATTGACGAGGAGACAAAGAATAAAATGCGTAAATATTGTCGAACTTGCGCTGAACAGAAATTTCCCCTCGTCGACATTTTCAGCGACAAGGGAATACAAATGCGTTTGAATTTACAGATAAAACATTTGCAGCAAATTGCCGAGAGCGATTCACTCACGACGCAAATGTGTATGGACTGTATTTGCGATTTGAAGATGAGTTTCACGTTTTTCGTTCAAATTAAAAAGGCGGAAATGAAGCTACGGGCGATTAGGGCGAAATTCGTCGAGGACTATCAGGAGAATTTTCTTCCTTCGattgataaattttcatttggCAGCGAAAAAGGGGGGAAAGAAACTAAAGGAAACGAAAAAGAAACTAAAGGTTTCGATTCGGAGACGAAATGTCAGTCTTTGATTCAGCACGACGCGACGAATCTGAAGAATAATGGACCGAGAATTTCGGCTGTTTTCTCGACGAACGCCACTGAGTGGGAGAGGAAAAAGGGAGATCGAGTGGACGGGAAGATCGAACGTGAAGTGAAGGACGAGGAGAAGGTGAAGATCGAACCGAAAGGGAATCAAGACGAGAGTGATAATGAATCGATTGAGGAGTTCGATCCCGAGGATCCTGGTTTTAATCCCACGGACGAGGAAGACGAAGAAGAAGTCGAGGAGTCGAGTGTTCTCAATCCCTTCAAACGAACTATCGAGAAAATCGAAACCGGAGCTTTGAACAAAAATTCACCTCGAGAAAGTTGTTCGAAGCAAAATTCGTCGAAACTCTCTTTGAACCAAATTTCATCGAAGGAAACTTATTCGAAGGATTTTCCAAACGTATCGAAGGATTTTGCGAACGTATCAAAGGAAAGTTCTTCGATGGATTTTTCGAACGTATCGAAGGATAGTTCTTTGAAGGATCTTTCAATTTTGTCAAAGGAAAGTTATTCGAAGGATTTTTCGAATTTGGCAAAAGAAAGTTGTTCAAAGGATTTTTCAAGTTTGTCGAAGGATTTTTCGAATTTGTCGAAGGATTTTTCGAATTTGTCGAAGAGAGAAGAAGTGGAGGAAACAACCTCGAGAGGAGAGGAAGAGAAGAAACTACTGGAGTCCGAGGAGCAGGGGTTGAAGAGAAAATTCTCGGAGACGAGATCGAAGGGCTTCGATCCGAAGATTCGGAAATTTAATGTGAACGACGCGTTGAGTATAAAGCAGGAGGAGAATGGGGTGATGTATGTGACGGTGAGGGGGGAGAAGCCGAACGAATTGCTGCTGGTGAAGGTGAAGAAGATGGAGAAGGCGGAGAAGAGTCGACCGGGACGGAAGGAGAGCGACAATTTGTTCGTCGACCGGAGTCTCGAGCAAAAGGGGCAGATAATCGAACACCAAATCGAGCAGTACAAGCGAAGACGGGAGAAAGTTCTCGGTCCGATTGCCACGACGGAAATCATCATTCCTGAGTGTCGAATCAAGACAGAGCAGGAATCGCTGCCGAATCAATTTTTGAACCAGTTTTTGAATCAATCGGATCAGTCTTCGAACCAGTTTTTGAATCAATCTTCGAACCAGACAAATAAGTCGTCGAACATTTCTTCGAATCAGTCTTCGAACCTTTCTTTGAACCTTTCTTCGAACCTTTCTTCAAATCAGTCTTCGAACCTTCCTTTGAACATTTCTTCGACCCTTCCTTCGAACATTTCTTCAAACCAACTTTCGACCCTTTCCTCCCCCCAAACACTCTCCGAAAATTATCCCCTCAATAATCCGACCCTAAAACTAAAAGACATTtcggaaataaaaaaagagaagccGCAGAGGTGTAAGGACAGAAAAATGCCGGTGGACGTGAAGGTGTACACAAACGCGGAGGACTATAACAATAGAATTGAGACGGTGAAGAGTAAATTGGAGGACAAGCAGAGGAAGGACTGGGAGGAGGTGAATCCGGAACAGGAGAGCACACTGGAGAGATTGAGGAGGATCTTGGAGGGCAAGGACGACGAGTGTCTCGGGGAATTTATGGAGAATTTGCAGCAGAggaaaatgataataatgaaaatgaGCGACGAGGATCTGGTGAATTTGTATCAGGAGAGAATGGCGGGAAAAATTTACACCAACACCAATGAGGAGAGCGATCCATTGGAATTGAATTTGGATTGTTTCGATTTGAAGTCAAGTGAATCGTTCGATTGTGACTTTTGTTTCagCGAATTCCCGACAAAGGACGTTTGCGACGAGCACATGAAATTTCAcgattcaaaaattcaatatctctgCGAGGATTGCAACGAGGAATTCACAATTTTGCgctataaaaaaaatcacaatgTCATATGCATTAGAAAATTGATTTGTAAATATTGTGATTTAATGTTGGACTCAAAGGGTAAAAAGAAGCAGCACGAGCAAAAGCATTGCGACAGTTTATTTGGACAATTGTGCGAATATTGTGGTGAGAAATTCAAGCATCAGGGCACACTCGATCAGCACGTGAAATCGAAGCATATGACGttggagaaaatatttcaatgtccCAAGTGTCCGAAGAAATTTACATTCAAGACAAAATTGAGTTTTCACTTGAAGAGCGTGCACACGGCAATGAGGGCGTATTTGTGCGAGGATTGCGGTGCGGATTTCAAGAATCCCGCCAGTTTGCGGCATCATCGTATTAGAAAACATTTGCCCACTGGCAATAAGCGGGAATGTCCTGTTTGCAGGAAAATGATTCCGTTTTATAGTCTCAGTAAACATATGCACACGCATAAGGCGTACACGATTAAATGTCCGCATTGCGATAAGATGTTTAAGAATTCTTCGACTCTTAAGCAACATGTTCGTATTCATGAGGATCAGAGACAATTTAGaTGCGACACATGCGGCGTGGGTTTCAATCGAAGAGACGGCCTCCGCCTTCACATGAAGGTCCACGAGAAAGCCGACAGTCGAGGACTAAAGGAATGCTCGTGTCAAGTGTGTGGCGAAAAATTCCCCAATCATTCAATGCTCGTCATTCATCGCAATCGAATTCACAAAGACGGAAGAAATTTCACCTGCCACATTTGCAATCGTTCCATGATATCGACAAGATCATTGGAATGGCACTTGGCGCACATTCACAATGAGCCACTGCCGGGAATCGTCAAGGCCGAAATGATCACTGGCAGCGACTCGAAACGCGTCGCCTGCTTCCATTGTCACAAGACATTCAAAACTGAAATGATACTTCGTACACATATCAAGAATTCTCATATGGAAAAGGAGCCGGTCAAGTGTCTCGACTGCGACGACACTTTTGTCAGCGAAGTGAGACTCAGACATCACATGATGGTGGCGCATAATCGTCTGGAGGGAACGCTCGCGTGTCCACATTGTCCAAAGAGATTCGTCAATCAGTTGCGGCTCAAGACGCATATGATTGCGCATTCGGAGGAGCGACCATTTAGATGTGATATTTGTGGATTTAATCTCAAGACGAAGATTCAGCTGATTAAGCATCATCAGAATAGGCACAGTGACGAGAGGCCTTTGCAGTGTCGGTACTGTCCCTGGAGGTGTAAACAGGTGAGCGCCCTGGTTTGTCACGAGAGAACGCACACGAACGAGCGTCCATATTCGTGTAGCGTTTGCAGACAGCGTTTCAAGTACCTTGGCGATAAGAATAAGCACGAGAGACGACACGAGAGTCTCGGCGGTTCTGGATTCAAGCGAATTGTCACTAATCGTGGACCGAAGAAAGTGAAGACGAGAAAGGAGGATGACGACACGTCGAATTCCGATCAGGAGCAGGAAATGCTCGAGGAACAAATGGAGGAACAAATGGAGGAGCCAATGGACGAGCAAATGGAAGACGACGAAATGGAGACAATGGAAATGGAGGCGAGATTAGTCGATGCCGCCTATGAGGCCGAGGAACATGTGAAAATTGAGGCGAATATTATTGGTACCGAGGACGAGCACGGCGACTATCCAcagGACTATGAAGAAAGTTCAAAGGACGCAACCGAAGTGATAATGAACATGGAGGACACTGCCGTTTATACCGAGGAAGTGACAGCGGAAAATATCGAGAGTATCGAGACAACGCAAATAATCGATGACGAATTAATGGCAAATCAACTTCTCCAATCGGGCACCGTCGTTCACATCGAGCAACAGGACGAGGAGGGCAAAATACAAATGATCCCCGTCGTCCTCTCGCTTCCCGATCTCACCGAGGAGAATGCCGAAGTTAATCTCGCGACAACTTCAATAATGTACAATAACGAAgtcgaagaagaagaagaagaagaagaagagtaa
- Protein Sequence
- MSYNLRTKTKTGSPKVAQFHNYATSSSSSQAEKSSFTPVTNINDLKKITPRVKVLNQETPTLQSLRKSSLESPNFPSPKKLSSQESSNSFQSSSRKSSQESQSSRKSTNLSLTRKETKSNQKTIILSSPEKNDDETEIIDEETKNKMRKYCRTCAEQKFPLVDIFSDKGIQMRLNLQIKHLQQIAESDSLTTQMCMDCICDLKMSFTFFVQIKKAEMKLRAIRAKFVEDYQENFLPSIDKFSFGSEKGGKETKGNEKETKGFDSETKCQSLIQHDATNLKNNGPRISAVFSTNATEWERKKGDRVDGKIEREVKDEEKVKIEPKGNQDESDNESIEEFDPEDPGFNPTDEEDEEEVEESSVLNPFKRTIEKIETGALNKNSPRESCSKQNSSKLSLNQISSKETYSKDFPNVSKDFANVSKESSSMDFSNVSKDSSLKDLSILSKESYSKDFSNLAKESCSKDFSSLSKDFSNLSKDFSNLSKREEVEETTSRGEEEKKLLESEEQGLKRKFSETRSKGFDPKIRKFNVNDALSIKQEENGVMYVTVRGEKPNELLLVKVKKMEKAEKSRPGRKESDNLFVDRSLEQKGQIIEHQIEQYKRRREKVLGPIATTEIIIPECRIKTEQESLPNQFLNQFLNQSDQSSNQFLNQSSNQTNKSSNISSNQSSNLSLNLSSNLSSNQSSNLPLNISSTLPSNISSNQLSTLSSPQTLSENYPLNNPTLKLKDISEIKKEKPQRCKDRKMPVDVKVYTNAEDYNNRIETVKSKLEDKQRKDWEEVNPEQESTLERLRRILEGKDDECLGEFMENLQQRKMIIMKMSDEDLVNLYQERMAGKIYTNTNEESDPLELNLDCFDLKSSESFDCDFCFSEFPTKDVCDEHMKFHDSKIQYLCEDCNEEFTILRYKKNHNVICIRKLICKYCDLMLDSKGKKKQHEQKHCDSLFGQLCEYCGEKFKHQGTLDQHVKSKHMTLEKIFQCPKCPKKFTFKTKLSFHLKSVHTAMRAYLCEDCGADFKNPASLRHHRIRKHLPTGNKRECPVCRKMIPFYSLSKHMHTHKAYTIKCPHCDKMFKNSSTLKQHVRIHEDQRQFRCDTCGVGFNRRDGLRLHMKVHEKADSRGLKECSCQVCGEKFPNHSMLVIHRNRIHKDGRNFTCHICNRSMISTRSLEWHLAHIHNEPLPGIVKAEMITGSDSKRVACFHCHKTFKTEMILRTHIKNSHMEKEPVKCLDCDDTFVSEVRLRHHMMVAHNRLEGTLACPHCPKRFVNQLRLKTHMIAHSEERPFRCDICGFNLKTKIQLIKHHQNRHSDERPLQCRYCPWRCKQVSALVCHERTHTNERPYSCSVCRQRFKYLGDKNKHERRHESLGGSGFKRIVTNRGPKKVKTRKEDDDTSNSDQEQEMLEEQMEEQMEEPMDEQMEDDEMETMEMEARLVDAAYEAEEHVKIEANIIGTEDEHGDYPQDYEESSKDATEVIMNMEDTAVYTEEVTAENIESIETTQIIDDELMANQLLQSGTVVHIEQQDEEGKIQMIPVVLSLPDLTEENAEVNLATTSIMYNNEVEEEEEEEEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00882440;
- 90% Identity
- iTF_00882440;
- 80% Identity
- -