Basic Information

Insect: Leptopilina syphax
Gene Symbol: Prdm15
Assembly: GCA_032872505.1
Location: CM065477.1:35620330-35634039[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.00015 0.029 16.1 2.4 2 23 419 441 418 441 0.95

2 7 4.8e-06 0.00094 20.8 0.3 1 23 452 474 452 474 0.98

3 7 3.4e-05 0.0066 18.2 3.4 1 23 480 502 480 502 0.97

4 7 0.21 42 6.2 0.1 3 23 511 531 509 531 0.91

5 7 1.1e-05 0.0022 19.6 2.0 1 23 539 561 539 561 0.96

6 7 4.8e-07 9.4e-05 24.0 0.3 1 23 567 589 567 589 0.97

7 7 4.9e-05 0.0096 17.6 0.2 3 23 601 622 599 622 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.00015	0.029	16.1	2.4	2	23	419	441	418	441	0.95
2	7	4.8e-06	0.00094	20.8	0.3	1	23	452	474	452	474	0.98
3	7	3.4e-05	0.0066	18.2	3.4	1	23	480	502	480	502	0.97
4	7	0.21	42	6.2	0.1	3	23	511	531	509	531	0.91
5	7	1.1e-05	0.0022	19.6	2.0	1	23	539	561	539	561	0.96
6	7	4.8e-07	9.4e-05	24.0	0.3	1	23	567	589	567	589	0.97
7	7	4.9e-05	0.0096	17.6	0.2	3	23	601	622	599	622	0.95

Sequence Information

Coding Sequence: atgatGGCGGGCAATGCGGAAATAAATGGCAAGACGATGACAGAAATATTAGAGGAAGTTGTCGAGGGCGAGGAAGTGATATTCGAATCTGAAGATGTTGGAAATGGCGAGGATGGCGAAGTCGAGGAAATTGTGGAAATAATCGAAGAAATTGTTGAGGAAGTAGAGGAGGATGAAGTGGACGAAGTAGCAATTGAGTCACATCAGAAACAAATTTATTGCCAACAAGAGGAAGAGGCAGAGAATTTGGAGGAGGaatatttagaagaatttgaagATGTGCAGAAAAGAAGAGGGACTCGAGAAGAATGTTCTGAAAAAGAGAGAGTTGACGAGTACATAAAGGACAATTTTATCGAGAACGGCCAAGCCGTTTCGATGAGACGCGTCAAGAATCGAGTTGGCAATGGTTTATCGAAAGGAGAATTTGGAAATATCGTCGCCTATCACGTTGAAGAGGATTGGGAAGACGAGGAATTGGAACAAGGAAATAATCACATCGACGCTGATAATTCCCGGACCGAAGTAGAATACGATCATCATACTTTAAGTAACGCTGACAGCGAAAGTCAGGACGAGATTGtaaaaaatgcagaaaataatttagtttataCTGTTCTTAATCCAAAGAAATCCTCGACTGTCGTGAGGCCGAACCATAATCCCAAGTATCAGGAATCGGATTTTATAAAGATGGAGAGAATGGAAGATGAGCCAATCTGCTATGAAGGCGGAGATTTGGACGCCTTGTACGTGAACAATGAGACAGTCGTAGAAACTCCAAATCAACAGCAATACGAATTCGCAGACGTCTCCATGGAGAACGCACAAGACTGGGAGCCGGAGCAATCTGCTGAGCCGGCCCAGGAAGACAGTAACCAGGATCAAATATTTCTCCACGAAGACGAGGACGGGCAGCTTTACTTTAAAGATGACACTGGCACTTTGCAGCCCGTTTATTTAACCGAGGATGGAAACTATGCCATCGCCGGAACTGGAAACGAGGAGCCTGAGGTTCAAGAACCACAACAGGAAATAATGGAAGAAGATAAGCAAGACGAAGAAACGAATTACATTCCTCAAATGGATTTCTCTCGACAAATGACTAGCAAAAAGACCTCAATAGTGACAGCTTCCAATATTCAACAAGAAATGGACAATGAAGATAGTACTGTAACGATTTCTCTAATAATTTCGGAAGATGAGCATGGCCAGAAGCGAACTCAGGTCATTATTCCAACTGCAGAGAACACAAAGTGCGAGATATGCAATAAGAACTTTAAGACGTCTTTACAATTACTTAAACATAATAGGTTGAAACACGCACGCGAGGAAGACATCACAACAAGAAATTTCCCTTGTGATTTATGTCCAAAAAGGTATCCGGACCAGAATTCGCTGGCGCGTCATCGCAAGACGCACACGGGAGATCGTCCCTTCCAATGCCTCGAGTGTCACAAGTGTTTCCCAAGTGCGCCGACTCTCCGCCGGCACTTGAGCCTCCACAATCCCAATTCAAAGCCACTTCCTTGTATTTACTGCGGACGCCGATTCCTGGAGCAAGCCAACCTCGATAAACACGAATTGTCCCACCGTGCAGCGGAACAGCGGCACCACGCCTGCGACGTCTGTCACAAGACATTCGTCAGCTCAGTAGACTTGAGTATTCACTTGAAAACTCACGATCCGGATAGGAAATTCGATTGCGAGGTGTGTGGTCGTGAATTTAATCGTGTTAACAATTTGCAACGTCATATGATGGTGCATCAACAACAAGGAGAAAGCGAGGAGGTTTTGGCCTGCGAGGTTTGCGGCATCACTTACAAATTCATGAGCTCTCTAACAAGACACATGGTGACAACGCACATGAATCCCGAGAAGCTGCGCCAGCAGGCGGAGGAGCAGAGGAAGAAGCGCGAGAACAATTACAAGCGGTATTTGGAGAACCGACGATTGTACGAAACACAGCGAGCTGGCGGCTACATTTCGAAGCGCAGCTACTACAGCTCGAGATCGGGAGACGACCAGGATGAGCACGATCAAGTTTGA
Protein Sequence: MMAGNAEINGKTMTEILEEVVEGEEVIFESEDVGNGEDGEVEEIVEIIEEIVEEVEEDEVDEVAIESHQKQIYCQQEEEAENLEEEYLEEFEDVQKRRGTREECSEKERVDEYIKDNFIENGQAVSMRRVKNRVGNGLSKGEFGNIVAYHVEEDWEDEELEQGNNHIDADNSRTEVEYDHHTLSNADSESQDEIVKNAENNLVYTVLNPKKSSTVVRPNHNPKYQESDFIKMERMEDEPICYEGGDLDALYVNNETVVETPNQQQYEFADVSMENAQDWEPEQSAEPAQEDSNQDQIFLHEDEDGQLYFKDDTGTLQPVYLTEDGNYAIAGTGNEEPEVQEPQQEIMEEDKQDEETNYIPQMDFSRQMTSKKTSIVTASNIQQEMDNEDSTVTISLIISEDEHGQKRTQVIIPTAENTKCEICNKNFKTSLQLLKHNRLKHAREEDITTRNFPCDLCPKRYPDQNSLARHRKTHTGDRPFQCLECHKCFPSAPTLRRHLSLHNPNSKPLPCIYCGRRFLEQANLDKHELSHRAAEQRHHACDVCHKTFVSSVDLSIHLKTHDPDRKFDCEVCGREFNRVNNLQRHMMVHQQQGESEEVLACEVCGITYKFMSSLTRHMVTTHMNPEKLRQQAEEQRKKRENNYKRYLENRRLYETQRAGGYISKRSYYSSRSGDDQDEHDQV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00879963;
90% Identity: iTF_00882467;
80% Identity: -