Lsyp016754.1
Basic Information
- Insect
- Leptopilina syphax
- Gene Symbol
- -
- Assembly
- GCA_032872505.1
- Location
- CM065471.1:43532041-43533702[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.015 2.8 9.9 0.6 1 23 50 72 50 72 0.97 2 12 0.5 96 5.1 2.3 1 23 82 105 82 105 0.92 3 12 0.3 59 5.7 0.8 1 19 115 133 115 134 0.94 4 12 1.5 2.8e+02 3.6 1.1 2 23 244 266 243 266 0.89 5 12 0.0067 1.3 10.9 4.7 1 23 274 296 274 296 0.97 6 12 0.0062 1.2 11.1 1.4 1 23 339 362 339 362 0.96 7 12 1e-05 0.002 19.8 0.9 1 23 368 391 368 391 0.95 8 12 0.00062 0.12 14.2 0.9 3 23 398 419 396 419 0.94 9 12 0.004 0.78 11.6 1.5 1 23 424 447 424 447 0.97 10 12 3e-08 5.8e-06 27.8 0.8 2 23 454 475 454 475 0.97 11 12 5.3e-07 0.0001 23.8 0.4 1 23 481 503 481 503 0.98 12 12 1.6e-07 3.1e-05 25.5 0.3 1 23 509 531 509 531 0.98
Sequence Information
- Coding Sequence
- ATGCGCCTCTGCCAATACATTGATTCAAAtggaaaaacaaaatattcCCTTCTACCAATATTGgaagtgaaaaattcaaaaccaACAACCAACGTGATAAAATTGGAACAAGAAAATAATGAAGAACCATCATCGAATGATAATTTCCACTCATGCGGTGAATGttcacaaatatttttatccgATTCACAACTTCAGGAACATCAAGCGACACAcagtaaaaaatggaaaatgaaaatacgCCATTTTTGCAGTCTCTGTAATTTTGAAAGTGACAATAAAGACAAATTATCATCACACTATGAAAATGAGCACAATGTTGGgaataagaatagaaaaaaattctcctgCGACATTTGCGATTTCACTTGTCTCAAACAGAAGAGTTTAGAAGCACACGCTTGGCTACATTCGACAAATGATAATGACTCGAATTCTGATGACATCCCCTTCGAGCAGGATCCTTTAATCGATCATGAATTCAATAATGAGGAGGAAATAATTCACGAGGAGGAAATAGTTAACGACGAGGAAATTATTAACGACGAAGAAATTATTAACGATGAGGAAATTATTAACGAGGATATAAATAACGAAGAGGAATTAGTTAACGAGGAGGAATTTAATATCGAATTTAACAACGACAACGTGGTTGAACTGAATGAAATGAACGAGAGTTTGAAGAAGAAACTAAGACCGAAGggtatgaaaaagaaaaaggaaagatTATCTTGTCCTCAGTGCAATTTCCGATGTTTAAAAGAGTCGACACTCCTCGATCACATCACTGAGGAACATGAAATGGAAGCGGAGAATAATTACAATTGCAACTACTGCGATTTCACTTGTTCGACGAAAAGAGTTCTCAACGAGCACAAAATGTACCATCGCGTCGTGCACGACAGCAACGTTTACATCTGCAACTACTGCGAATTCAAGGCGGACAAAAAGGCAATAATTTGCACCCACATCAAGAGAAAACACCTTCGAGCTActcaacaaaaaaaacaatattacaCCTGCGAGCAGTGCGACTACAAAAACAAGAGCAAATACGAACTGAAAATCCACGTCATAAGGCGACACACGGACGATTTTAAATTCGACTGCGAAACTTGTGGCAAGAAATTCAAAGTCAGAGGCGATTTGACAAATCACGTGCGATTCTCGCACAAGGAACAACCTGTGATTTGTGACGTTTGCGGAAAGACTTGCATGAATAGTAATTCCCTTTACGTGCATCAGAAATTCGCCCACTATAAGGCGCAATTCGAGTGTCATTTGTGTAAGAGACGAATGGTGAGTGAGGAGAATTTACAGGAGCACTTATTGAAGCAGCATGAGCAAAGGGAGAATGCCGTTTGTGAGGAGTGCGGTAAAACGTTCACGAGAAATTCTCGATTGAAAATACACATGAGAGTTCATACGGGCGATAAACCGTATCCGTGtacaatttgtcaaaaatcATTTGCACGTCGAACGGCACTCAAGCAACATTTACTCATTCACACTGGAATACGACCGTACGTTTGCGATATTTGCGGGAAATCATTCACCCAAAAACCAGGATTGATCAGTCATCGAAAATCTCATCCAGGCTCACATCCACCGTTGCCGAGAGTTCAAATTGATCACATTTTAAACGACGTCATGAATAGATAA
- Protein Sequence
- MRLCQYIDSNGKTKYSLLPILEVKNSKPTTNVIKLEQENNEEPSSNDNFHSCGECSQIFLSDSQLQEHQATHSKKWKMKIRHFCSLCNFESDNKDKLSSHYENEHNVGNKNRKKFSCDICDFTCLKQKSLEAHAWLHSTNDNDSNSDDIPFEQDPLIDHEFNNEEEIIHEEEIVNDEEIINDEEIINDEEIINEDINNEEELVNEEEFNIEFNNDNVVELNEMNESLKKKLRPKGMKKKKERLSCPQCNFRCLKESTLLDHITEEHEMEAENNYNCNYCDFTCSTKRVLNEHKMYHRVVHDSNVYICNYCEFKADKKAIICTHIKRKHLRATQQKKQYYTCEQCDYKNKSKYELKIHVIRRHTDDFKFDCETCGKKFKVRGDLTNHVRFSHKEQPVICDVCGKTCMNSNSLYVHQKFAHYKAQFECHLCKRRMVSEENLQEHLLKQHEQRENAVCEECGKTFTRNSRLKIHMRVHTGDKPYPCTICQKSFARRTALKQHLLIHTGIRPYVCDICGKSFTQKPGLISHRKSHPGSHPPLPRVQIDHILNDVMNR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00882424;
- 90% Identity
- iTF_00882424;
- 80% Identity
- -