Basic Information

Insect: Leptopilina syphax
Gene Symbol: -
Assembly: GCA_032872505.1
Location: CM065471.1:43544407-43545228[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.23 46 6.1 0.9 1 23 58 81 58 81 0.79

2 7 5.3e-06 0.001 20.7 2.4 1 23 87 109 87 110 0.95

3 7 1.8e-05 0.0035 19.0 0.3 2 23 116 138 115 138 0.95

4 7 9.4e-05 0.018 16.8 0.5 1 23 143 166 143 166 0.97

5 7 1.5e-07 2.9e-05 25.6 0.2 2 23 173 195 172 195 0.93

6 7 2.6e-07 5e-05 24.8 2.2 1 23 201 223 201 223 0.97

7 7 3.4e-06 0.00066 21.3 0.1 1 23 229 251 229 251 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.23	46	6.1	0.9	1	23	58	81	58	81	0.79
2	7	5.3e-06	0.001	20.7	2.4	1	23	87	109	87	110	0.95
3	7	1.8e-05	0.0035	19.0	0.3	2	23	116	138	115	138	0.95
4	7	9.4e-05	0.018	16.8	0.5	1	23	143	166	143	166	0.97
5	7	1.5e-07	2.9e-05	25.6	0.2	2	23	173	195	172	195	0.93
6	7	2.6e-07	5e-05	24.8	2.2	1	23	201	223	201	223	0.97
7	7	3.4e-06	0.00066	21.3	0.1	1	23	229	251	229	251	0.97

Sequence Information

Coding Sequence: ATGAAAAAATCTAGAGAAgggaaaatagcaaaaaaacgAAAACCGAAGACGTTAAATTCAATTCTCGACATTGCTATAAAAAATACCGGCATTGAAAAAACAATTCCAAaacgaagaaaaagaagaaaaaatcccAACGAACCATTCACTgaggaaagagaaaaaattgagtACCAATGTTCAGTGtgtaatacaatatttttgaagaaggAAATTTTGCAGTCGCACTTTATTCGTAAGCACACTGAGGGTTATAATTTCTCCTGTGACGAATGtggtaaacaatttaaaatcaaagGCGATCTCACGACTCATAAAAGACTTCATCACTTGGAACCACCGACTGTTTGTGATGTTTGCGGAAAAACGTACAAAAACAGTCTCTCACTCTACGTTCATCAAAAATACGCCCACTATAAAGCAAGATTCGAATGTCCAGTGTGTAAACGTTGCATGGTGACGCAGGAGAATCTCGACAATCACATCCAAGTGATGCAcaatcaaaatgaaaaattaatttgcgACGAATGCGGCAAAATGTTCACCAAAAAAGTCAATTTACGACGACATATTATCAATGTTCACACTGATATTAAATCATTCACGTGCCCAGTTTGCTCGAAGGCATTCTCACAAAGATATCATTTGCGGCAGCATCTTCTCCTTCACACCGGACAACGTCTCTTCATTTGTGATATTTGCGGCAAACAATTCGCCCAAAAACCCGGTTTACTCAGTCATCGGAAAATTCATCCCGGCGAGCATCCCCCGTTGCCCGTCATTCGTTTGGATCACGTTCtcaaagatttattaaataaataa
Protein Sequence: MKKSREGKIAKKRKPKTLNSILDIAIKNTGIEKTIPKRRKRRKNPNEPFTEEREKIEYQCSVCNTIFLKKEILQSHFIRKHTEGYNFSCDECGKQFKIKGDLTTHKRLHHLEPPTVCDVCGKTYKNSLSLYVHQKYAHYKARFECPVCKRCMVTQENLDNHIQVMHNQNEKLICDECGKMFTKKVNLRRHIINVHTDIKSFTCPVCSKAFSQRYHLRQHLLLHTGQRLFICDICGKQFAQKPGLLSHRKIHPGEHPPLPVIRLDHVLKDLLNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00879953; iTF_00882422; iTF_00881501; iTF_00880703;
90% Identity: iTF_00881501;
80% Identity: -