Lsyp014280.1
Basic Information
- Insect
- Leptopilina syphax
- Gene Symbol
- -
- Assembly
- GCA_032872505.1
- Location
- CM065471.1:13166816-13204853[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.5 98 5.0 0.1 6 21 256 271 253 272 0.90 2 13 0.0053 1 11.2 0.5 1 19 278 296 278 301 0.95 3 13 0.00012 0.023 16.4 3.7 2 23 314 336 313 336 0.96 4 13 0.0032 0.62 12.0 0.5 3 23 349 369 349 369 0.98 5 13 3.6e-07 7e-05 24.4 1.5 2 23 407 428 406 428 0.97 6 13 0.016 3 9.8 1.0 1 23 433 456 433 456 0.95 7 13 0.1 20 7.2 0.1 2 23 526 547 525 547 0.96 8 13 0.00024 0.047 15.5 4.0 1 23 556 578 556 578 0.96 9 13 9.6e-07 0.00019 23.0 0.9 1 23 586 608 586 608 0.98 10 13 0.094 18 7.3 4.9 1 22 614 635 614 635 0.95 11 13 6e-05 0.012 17.4 2.4 1 23 664 686 664 686 0.99 12 13 0.17 33 6.5 0.0 1 23 749 772 749 772 0.97 13 13 1.7e-06 0.00034 22.2 4.7 1 23 777 800 777 800 0.96
Sequence Information
- Coding Sequence
- atgacAACTGTTAATAATTGGGAAAATACCTGCAGACTTTGTTCTGAAGTGAAGACTGAAATGCTATCAATTTATGGAATTGAAGGCGTGCAACGAAAAGTGGCTCAGAAACTTCGAGCTTGTTTGCCAGTTCTCGTTTACAAGACTGATCCTTTGCCCAAGCAAATTTGCCAATTTTGCGCTGCAAGACTTGATGATGCCTATGAATTCCGAGAATATTGCTTAAATGTTTACAAAACAATGCACACTAAACTCttggtatttaaaaattcagagtCTGTACAGATTTTTCTCAATGCCATGCAGAATTCTCCAGATCCTTGTCAAgTACAATTATGCAAAGAAAAATGTCGAGCTCCTCCACCTTTAGTTCCATTACCAGCAACACTGCCAATAGAAAGTACAACTCCTTTAATTAACGCACCCGAACTATTGCAATTGAATAATTCAAGGGACCCACTGCCAGAATTGCCGTGCGAAgtgcaaattaaagaagaacCAATAGACACATTAATTCGAGCTGATTCTGATCTCTTAGGCCTGAATAAAAGAAGTTTACTAATCTCAGGAATAGGAAAGAGAGCGAATGCTTTTGCAAATGACTATGGAAATGCATTTGAGAATAATGGAGAATCAAATTTTGATGAAAGTGATAAACCACGAACAAGTATACTGGAGCAAGTACTCAAAGGCAATATAACTTTAAGCGATCGTAAAGATCAGAAATCAAAAACTGGACTTAGCTCTAAATGGTGGTGTGCCccttgtaataattattatagAACAAAGGAGGGTTTGATAAAGCACATGCAAGTGTTCTGCCCGCGAAGGTACACGTGCAGAAAGTGTTCTCGTGTCTTTTATACTGTGGAGGATTTAGCAAAACATGATGGCACCGATCATTTGAAAGTCACTCTGGATTTTGACGAAGTAGTTACCAAATGCCATCAATGCGATCGTGAATTCGTTAGTTGGGAAATGCTCAGGCATCACAGACTTCGTGATCATGTAGCCGAAGATATTGATATCGGAACAAGTACTTGGTGTCCATCTTGCAATagATTTTTCCCTTCAATAGAAACATACCAAAACCATATGCAGTTACATCAATTGGACACTATGACCAGGTTACCAATAAGTTCCTTACCTTCAGTTTCGCAGGAAAATCATACTCGAGAGCTTAGGAAAGAAAACTTGAACGACAGCGTTAAATCATTATCTTGTCCCACATGCGGCAAAATTTGTACGCAGCAGAGCGCATTGTCAAATCATATGCGAACGCACGAGCCAAAGAAACATCAATGCGATATTTGCGGTCGATTTTTCGGTCTTTACATAAGACTTGCAACGCACAAGATGACTGAACATAATCAGGGAATGATGCCAGTCATGACAAGTATCGAACAAGAGGAAGCTTTAAATGCCGAGAGAGAAGCAAGGGAAGCAAGAGAAGCTAGATCACGTGGCAAAACAAGATCGTACGATGAGATGGTCGAAGAAGATGACTATTCAGTTAATGACACACCTGTCAAGCGGAAAATTGTTCTTAATTCTAGTTCGATTAAAAATGCTGTACGTTGTGGTATTTGCTTGCAATGGTTTAATAACCGCACAGAAATGATTGCTCACTTGCAAACGCACTCTGATTCATTTAAACCAAAAAGCTTTTGTTGTAAACTGTGTACAAAGTCTTTTAAAGAAAAGTGGCAATTAACTAGGCATGAAGCATCTCATAATCGAACGACTATTACGACTTACACGTGTACAGTTTGCAATGAAGTGTTTACAGACAAATCGTCCTATAAGGCTCACCAAGCGAAACACTCGATTGACAAAACTTTTCACTGTGCAAAAtgcaataagatttttttcaaagaattttcattGATGACGCATCAATGTACTGTGAAACCattatttcataagaaaaatacAATTCCAAAGACTTTGCAAAGAAGCAATTCTGCCTTATTTAGTGGTTCTAAAAAATACAAGTGCTCGAAATGTAGTGCAACTTTTACCAATTCGCAGTCCAGAAATTCTCATATGAGAGTTCATTCAGAGGCTCACCTTTTGAATCAAGTTCGTAAGCAAGCATTGAAAAAAGAAGCAGGAAAAATGCCAAAACTTAAACCTCAAGCCAGCGCTTGTACTTCTGTGCCTCGTATCGAACAAAATACAGAGGTCCTTGAAGTTAATCCACCGGCACCAGTCAAAAGAACTCTCATTAAAACAGCTGGAGGatatCGTTGTGGCGTGTGCCAATCACCGTTTGTGCTGCGTGAACTAGCTGTTGCACATCTTCGATCAGCTCATCCACTAATGCCATATCAGTGTCCTTATTGTAAGAAACGTTTCACAACACAGTACACGTTTACGCATCACATAAAAGCAGATCATCCTGATGAGtcagagaattga
- Protein Sequence
- MTTVNNWENTCRLCSEVKTEMLSIYGIEGVQRKVAQKLRACLPVLVYKTDPLPKQICQFCAARLDDAYEFREYCLNVYKTMHTKLLVFKNSESVQIFLNAMQNSPDPCQVQLCKEKCRAPPPLVPLPATLPIESTTPLINAPELLQLNNSRDPLPELPCEVQIKEEPIDTLIRADSDLLGLNKRSLLISGIGKRANAFANDYGNAFENNGESNFDESDKPRTSILEQVLKGNITLSDRKDQKSKTGLSSKWWCAPCNNYYRTKEGLIKHMQVFCPRRYTCRKCSRVFYTVEDLAKHDGTDHLKVTLDFDEVVTKCHQCDREFVSWEMLRHHRLRDHVAEDIDIGTSTWCPSCNRFFPSIETYQNHMQLHQLDTMTRLPISSLPSVSQENHTRELRKENLNDSVKSLSCPTCGKICTQQSALSNHMRTHEPKKHQCDICGRFFGLYIRLATHKMTEHNQGMMPVMTSIEQEEALNAEREAREAREARSRGKTRSYDEMVEEDDYSVNDTPVKRKIVLNSSSIKNAVRCGICLQWFNNRTEMIAHLQTHSDSFKPKSFCCKLCTKSFKEKWQLTRHEASHNRTTITTYTCTVCNEVFTDKSSYKAHQAKHSIDKTFHCAKCNKIFFKEFSLMTHQCTVKPLFHKKNTIPKTLQRSNSALFSGSKKYKCSKCSATFTNSQSRNSHMRVHSEAHLLNQVRKQALKKEAGKMPKLKPQASACTSVPRIEQNTEVLEVNPPAPVKRTLIKTAGGYRCGVCQSPFVLRELAVAHLRSAHPLMPYQCPYCKKRFTTQYTFTHHIKADHPDESEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00880695;
- 90% Identity
- iTF_00882409; iTF_00880695;
- 80% Identity
- -