Lsyp011090.1
Basic Information
- Insect
- Leptopilina syphax
- Gene Symbol
- -
- Assembly
- GCA_032872505.1
- Location
- CM065470.1:32694199-32708795[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 9.5e-06 0.0018 19.9 0.6 2 21 54 73 53 74 0.96 2 14 3.8 7.4e+02 2.3 0.5 1 12 82 93 82 99 0.81 3 14 1.9e-05 0.0038 18.9 1.0 2 21 128 147 127 148 0.94 4 14 0.0039 0.75 11.7 0.1 1 21 158 178 158 179 0.94 5 14 0.00019 0.036 15.8 1.6 1 23 187 210 187 210 0.95 6 14 0.00019 0.038 15.8 0.2 2 21 243 262 242 263 0.94 7 14 1.7e-05 0.0034 19.1 2.0 1 23 271 294 271 294 0.96 8 14 5.7e-06 0.0011 20.6 1.9 1 22 345 366 345 366 0.97 9 14 0.00049 0.095 14.5 0.2 2 21 379 398 378 399 0.95 10 14 0.0043 0.83 11.6 0.7 1 21 458 478 458 479 0.94 11 14 0.0037 0.71 11.8 1.2 1 23 490 513 490 513 0.97 12 14 0.13 25 6.9 6.5 1 23 520 543 520 543 0.98 13 14 0.00065 0.13 14.1 2.9 1 22 563 584 563 584 0.96 14 14 0.96 1.9e+02 4.1 2.3 3 20 594 611 592 615 0.91
Sequence Information
- Coding Sequence
- ATGCGTGTCACGAGAAGAAACTGCGCTTGCGCCACTCCTCTCATTGatCACTATTGGAATTTTCTATTGGGATCACAGGAGCAAACGACGAGAAACTCTTGGAAGAGGAAGAAGGAAACTGCACAGCAGCAAAATATATCGCCAGATggttcgaaaaaaaaatgtccaaattGTGGAAGAGTGTAttcatttaaacaaaatttaatgaaacacCTCCGATTGGAATGCGGTGGGAGGCGATCATTTTCCTGTCATCTTTGCTCCACTGGATTCCATGAAAATTACGGTTACATCAATGTAGCGCCAGTAACGTATCCAGGAAATCTTCCATTGCCTAAGCAAAAGCAAAATCAAAGTTCAAATGAAGGATGCAATAATCTTCGATGTACAAGAtgtggaaaaatttattcttcaaaGACAAATTTAAGGCGACACGAGAGATTCGAATGCGATGACTTTATGCAACCACGATACAGCTGTTCTCGATGTGGACGTGGTTACACAATAATCGGAAATCTTCGACGCCATGAGAAATGGGAATGCGGCGGAAGAAGAGGATTTTTTTGCCTCTATTGCAAGAGTGGTTTCACGCAAAAGACAAGTCTACAACGACACATTAATCTTGTACACAAAACCCCACTCAGTGGAATAGAAAcgaattaCCACAGGAGGACATTTCGTAGATCACGGCACTCGAATTATCTCAACAATGAAGATTTATTGCTAAATTGCCCTCAGTGCGGAAGGGGTTATAAGGTGAAGCAAAGTTTACTGAAACACATGAAATACGAATGTGGTGGTGCAAAAACATTCGCCTGCGACATTTGTCACAGTTCATTCACGCAAAATGTCAGCCTTCGAAGACATTTGATGAGGAATCACAATATTTATCAACCGCCCTCATGTCGACGCATTCGAAGACACAGACagTGGAGCTGCGAAAATTCCCGTGAAACATTCGACGAGGATTGTCcgcttaatttgaaaaaagcaaGTGAATCCGCGTTGTGGCCAACTGAAACTGATAAACCTTACACGTGCACAAATTGTGGTAAAGGCTATACGCATCCGTTCACATTAAATCGTCATCGTCGAACTGTTTgtggaaaaattagaaatacaaCGGGAAAATGGAAATGTTCACGTTGCACGAGAACTTATGTCACTGAGGGCAATTTAGTGCGACACATTAAATTCGAATtTTCTGATGGCTGGAATGTGCATCGGTATCCAATTAATCAACGACGCTACGTGAAATACAATTCCTTAGCGCACACATCAAGTAATATTGACTTTAGTTTGGATAAGGAGCAGATAATGCAACATCAGGGAATTCCTCATCCTCAGCATACTAGTAGTTCACACAAACGGCATATTTGCACATTTTGCAGAAAGGCATATCCCCTAAAGTCATTGTTGAGTCGACACATTCAATACTCGTGCAAAATGAATCCAAAATGTTCCCATTTCACTTGTACATTTTGCCCCTATAAAAGTATGTACAAGGCAAATATGGAGAGGCACATTAAAAATGTACACGACACTAatgcattaaaatataaatgtgaATTGTGCAATTTTCGCAGTAGTTACACATTTTGCGTGAGAAGGCACATGAAGACATTTCATCgCTTATCAGCGagaatatttgaaaatcgaAGACACGAGAGGATGTTCTCGCAGAAATTTGAATGTCCTCGTTGTCGGAGATGTTATAGTGGAAAAACAAGCCTCTCAAGACATTTGAGAAAGGAATGTGGTGTTTTAGGAGCTCATCTTTGCGTCTTTTGTGGCTATCGTGCAAAGCACATGCAGACACTCCAGAGGCACATTTGGCGTAGACATCAATtataa
- Protein Sequence
- MRVTRRNCACATPLIDHYWNFLLGSQEQTTRNSWKRKKETAQQQNISPDGSKKKCPNCGRVYSFKQNLMKHLRLECGGRRSFSCHLCSTGFHENYGYINVAPVTYPGNLPLPKQKQNQSSNEGCNNLRCTRCGKIYSSKTNLRRHERFECDDFMQPRYSCSRCGRGYTIIGNLRRHEKWECGGRRGFFCLYCKSGFTQKTSLQRHINLVHKTPLSGIETNYHRRTFRRSRHSNYLNNEDLLLNCPQCGRGYKVKQSLLKHMKYECGGAKTFACDICHSSFTQNVSLRRHLMRNHNIYQPPSCRRIRRHRQWSCENSRETFDEDCPLNLKKASESALWPTETDKPYTCTNCGKGYTHPFTLNRHRRTVCGKIRNTTGKWKCSRCTRTYVTEGNLVRHIKFEFSDGWNVHRYPINQRRYVKYNSLAHTSSNIDFSLDKEQIMQHQGIPHPQHTSSSHKRHICTFCRKAYPLKSLLSRHIQYSCKMNPKCSHFTCTFCPYKSMYKANMERHIKNVHDTNALKYKCELCNFRSSYTFCVRRHMKTFHRLSARIFENRRHERMFSQKFECPRCRRCYSGKTSLSRHLRKECGVLGAHLCVFCGYRAKHMQTLQRHIWRRHQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -