Lsyp032824.1
Basic Information
- Insect
- Leptopilina syphax
- Gene Symbol
- -
- Assembly
- GCA_032872505.1
- Location
- CM065474.1:44453985-44459975[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2.5 4.8e+02 2.8 4.7 2 23 333 355 333 355 0.96 2 20 0.046 8.9 8.3 2.1 1 23 437 459 437 459 0.98 3 20 0.22 42 6.2 0.2 1 23 508 530 508 530 0.97 4 20 0.01 1.9 10.4 0.2 1 20 567 586 567 588 0.94 5 20 9 1.7e+03 1.1 1.5 1 23 600 623 600 623 0.86 6 20 0.0098 1.9 10.4 1.4 2 23 629 650 628 650 0.94 7 20 0.00043 0.084 14.7 0.1 1 23 698 720 698 720 0.97 8 20 1.2e-06 0.00024 22.7 0.2 2 23 751 773 750 773 0.96 9 20 0.0001 0.02 16.7 0.4 3 23 781 802 779 802 0.95 10 20 4.8e-05 0.0094 17.7 0.1 2 23 810 832 809 832 0.95 11 20 3.8e-05 0.0075 18.0 1.1 1 23 840 862 840 862 0.93 12 20 0.41 80 5.3 0.2 2 19 897 914 896 915 0.94 13 20 2.1e-05 0.004 18.8 0.1 3 23 929 949 928 949 0.96 14 20 0.0026 0.51 12.2 1.9 1 23 961 983 961 983 0.97 15 20 0.00023 0.045 15.5 1.1 3 21 1004 1022 1002 1023 0.93 16 20 9.5 1.9e+03 1.0 0.9 2 23 1041 1063 1040 1063 0.85 17 20 0.0002 0.038 15.8 0.4 2 23 1084 1106 1083 1106 0.94 18 20 0.0079 1.5 10.7 1.1 1 23 1112 1136 1112 1136 0.94 19 20 0.77 1.5e+02 4.5 2.9 1 23 1141 1164 1141 1164 0.91 20 20 0.62 1.2e+02 4.7 0.6 2 23 1197 1219 1196 1219 0.93
Sequence Information
- Coding Sequence
- atgaATGAAGTCGAGGAGTTGCAGGGCCTCGAAAGTGCCTGTCGACTTTGTTTAACAACCGATGAAACGAGATCTTCCATATTCGGTGCAGCCTACAATGTAGATCCGTtgattgtgaaaataaaaaattgcctgTCCCTTCAAATTTCTCAGAAGGACAAATTGTCGACATTAATTTGCATTACTTGCGTTAATAAAGTGAATCAATGGCATCAATACAAGAAGGAATGTCTTCAGTCTCAGGACAAGTTATCAGAATGGCTCGCAAAACAATCGGAACCACTTCCGATTATTACCGTAAAgaaagaagtagaagaagaagaagaagattccACAGAAAATACAGAAGTTGAAAAgATTCAAGAGAAAATTGCCGAGAACGAATTAACAAACTCGGAGGAAATCGCACccgaaataaatgaaaatacgGGGAAAAACTCCGAAACGAAAAATGACGAAGTCGAAAAAAATATCGAagaagaaaattcaataaatgaaaATCCCGAAGCAAATTTGCAAAATGCGGAGAAAAATTCCGAAAACGGTGAGAAAATAAcggaaaatatagaaaaaacaaCGGCGGATGTGGAGAAAAATTCCGAGAATGCAGAGAAATTGGTACAAAATTCGGAAAATCAGGAGAAAAATGTGCAAAGTGGAGAAAATACGGAGAAAACGGGAGAAAATAccgaaaagaatgaaaaaatggagaatttgaaaaaatcgagGGAAAACGAGAATGAAATGGAAACTGAATCTGAAACGGAGAAACGTGAGACAAATAAACGACGACTATCGACTGATTTAGAGAATGATTCGGCGAAACGCTTTAATCCACTGCCGATAAAGACGGAACCAATCGACGAGACGGAAATCCCACTTGCCGACGATATCAAAATTCCCCTCGAGGTGCAGCAAAAAGTTCTCAACAAAggcaaaaagaaaatacgtcgCGGACCTCATACACACTTCCGTGGCGCTAGAATTTTCAAACGCAAATGCCTTCACTGTCAGATTAATTTGCACTCCAAGACTTCTTACGCGAAGCATATGGCGCGTTTTCATTCTAAAGCGCATCAAAAAACGGGAGGAATTGCGGAAATTGGACAAGGAACGGGAATTGGACAAGGAACAGGAATTGGAATGGGAATTGGAAGAGGAAAAGGAATCGGAACGAGAAGTAGAACAGACTCAGAGATCGAGGAGACTGAGGAGCTGATCGAGGACGTCGAGGAGGAGCTGGAGAATCTCGAGGAGGACGCGCCGTTAACGCCAGTGCAGCAGAACATCATCAGTCAATTGAAGACCTACACCTGCTACTCCTGCGAGCAATCATTCCAAGATCGTCGCAGTACTTTGAACCACATTCGCCAGCACATGCCGGACCTGCGAACCTTCACCTGCGTCGCCTGCCTCACGGAATTCGGGGACCAAGGAACCTACAAGGAACACTGCGAGGAGAGCTTCGAGTGCGCGATGAAAATCGCCCTAGTGATTCCCATTCAAGGCACCGAGAAGTACTTCACCTGTAATATGTGCCTCCAACCGATGGCCAACCGGAAGGAACTCCTCAGCCACCTGGCCAAACACTCCGACAAACAATACGAAGAACTAATGGCCCCACCGCCCAAGCTGACCCCAATCGTCACCGTGAATTCCGCCTCCTTGCCCTACGGAATGGGCGACCCGGCCTACAACCACGAGTGCGATCTCTGCGGAATGATCTATCGCTACAAACCAAATATGATTAAACACCGGGAACTTTGCGCCAGTCTCCAACCCGAGGGTCGAACCTCCTACAAGTGTATCGACTGCGGCATGACCTTCCTAGTGTTCAACAAATTCCACAATCACGTCATCACCGAGCACAAGAAAAAGGAGCTCAAGTGTCCCAAGTGCGCCGCGAAGTTCCGCTCCCCCAGTGACTACCTAACGCATCACGAATTCCACCGGAAGAAGAATAACCTCAAGGATCCGCAAATATGGAAAATCGAGGGCGACGACAAAAAGGTCGCTTGTTCCTTGTGCAACCTTCTTGTCCCCAGGGCGGACCTACCCGAACACAGGAATTTACACCTAAAGGTCAAAATCTACTCCTGCGTTATCTGCCGATCAATGTTCAGTAGCCCCGGCGCTTTGGAGATCCATATGAAGGACCATGGAATCGACGACCCCGGGGAACGAACCGCGAACACCAAGTGTATGGAATACGGTCACGAGGAGACTCAAAGTCCAGTTGTGAAAAACACCGAGTGCGCGGAGTGCGGGAAAAACTTCTCCAACGTCGCGAACCTCAAGCGCCACATCCGTAACGCCCACGGCGAAGAAAGAAGAATCGACTGTCCGGAGTGTAACCGTAACTTCAAGAACAAGGAGTCTTTCGACGAGCATCAACGACTAGCGCACAACACCGAAAAAACAGTCCTCAACTGTCCCGAGTGTCCAAAAACTTTTGTATTCCAAGCGAACTTGGATCTACACATCAAGAACGTGCACATACCAAAGGAAACCTCTTCACACGAGTGCGAAATCTGTGGCAAGTGTTTCGCGGAGGAATCTTCGTTGAAAATCCACCGCGGATGGCACAATAGAGCAAACTCTAGGTTCAGTTTAGAAGGAAGTTTGGCCGGTTCTTCAAAACCGGCTAAAGCGAGAAAGAGCTTTCCCACCTCGCAAGTGATACAACTACAATGCCAAGTGTGTGACGACAAATTCCACGACGTTGGGGACTTAAGAAAACACGTCTGGGACGTTCACTGTGCGCGAACCGCGAAACAAGAGATCTGCTCCATCTGCTCTAAGACCTTCCCCGACCAGGAGACACTGACGATCCATATGGAGCTACACGAAGCTAAAGACGACGACGACGAGGAAAACCAATTCCGCTGCGACATCTGCGACAAGTATTACAGTTCGCGAAAAATCTTATGGCGCCATAAGAAGCTGCATAAAGTCTCCCAAGTACCCTCCTACCAACGCTTTCAGTCCCTAGCAACCCGAAAAACCTTCTGCAACGGGTGTAATCGTACATTCTCCACCGAAAACCTCCTCAAGCGGCATAAGCTAACTTCCAGTGATTGTCAATTCGGTCGAGTGGTGATAGAAGGAAAAAAACCCGTCACATGCCACATTTGCAAGAACCTATTTCCGAGTATGAGCATCCTCTATCAGCACAAGCAGCTAATGCACAAGTTCCCATCGCGTGAGCGGAATAACGAGTGCTTGCCAATAACGAGTGAAGAAGGGGTCAAGTGCAACATTTGCGGTAAACTATTCTCCGGTGTTTCGAATCTAAAGCAACATTTCGCGATGAAGCACAAGAGTGTGACGACTCATCCTTGTAATGTCGGGAATTGTAAGATGATCTTCTCGACGCCGCACGCTCTCAAGAGTCATGAGTTACAGCATTCGAATATGATCTTCAGTTGTGGAATGTGTGAGAAGCATTTCTTTCATCGGGGGATTATGGAGAAGCATATTTACAATGCGCATCGAGCAGCTTATGAGTCGATTGTAGGCGATGATAAGGGTTCGCTGTTCAAGGAAACGGACCTCACGTCGTACACTGTGAAGGGAGCGACTGGAACCGTGTGCCCACGGTGTAAGATCAAGTATCCGAATATCAAGGCTATGAAGATTCATTACTTTAAGTTTCATGAGACGATGGGGTAG
- Protein Sequence
- MNEVEELQGLESACRLCLTTDETRSSIFGAAYNVDPLIVKIKNCLSLQISQKDKLSTLICITCVNKVNQWHQYKKECLQSQDKLSEWLAKQSEPLPIITVKKEVEEEEEDSTENTEVEKIQEKIAENELTNSEEIAPEINENTGKNSETKNDEVEKNIEEENSINENPEANLQNAEKNSENGEKITENIEKTTADVEKNSENAEKLVQNSENQEKNVQSGENTEKTGENTEKNEKMENLKKSRENENEMETESETEKRETNKRRLSTDLENDSAKRFNPLPIKTEPIDETEIPLADDIKIPLEVQQKVLNKGKKKIRRGPHTHFRGARIFKRKCLHCQINLHSKTSYAKHMARFHSKAHQKTGGIAEIGQGTGIGQGTGIGMGIGRGKGIGTRSRTDSEIEETEELIEDVEEELENLEEDAPLTPVQQNIISQLKTYTCYSCEQSFQDRRSTLNHIRQHMPDLRTFTCVACLTEFGDQGTYKEHCEESFECAMKIALVIPIQGTEKYFTCNMCLQPMANRKELLSHLAKHSDKQYEELMAPPPKLTPIVTVNSASLPYGMGDPAYNHECDLCGMIYRYKPNMIKHRELCASLQPEGRTSYKCIDCGMTFLVFNKFHNHVITEHKKKELKCPKCAAKFRSPSDYLTHHEFHRKKNNLKDPQIWKIEGDDKKVACSLCNLLVPRADLPEHRNLHLKVKIYSCVICRSMFSSPGALEIHMKDHGIDDPGERTANTKCMEYGHEETQSPVVKNTECAECGKNFSNVANLKRHIRNAHGEERRIDCPECNRNFKNKESFDEHQRLAHNTEKTVLNCPECPKTFVFQANLDLHIKNVHIPKETSSHECEICGKCFAEESSLKIHRGWHNRANSRFSLEGSLAGSSKPAKARKSFPTSQVIQLQCQVCDDKFHDVGDLRKHVWDVHCARTAKQEICSICSKTFPDQETLTIHMELHEAKDDDDEENQFRCDICDKYYSSRKILWRHKKLHKVSQVPSYQRFQSLATRKTFCNGCNRTFSTENLLKRHKLTSSDCQFGRVVIEGKKPVTCHICKNLFPSMSILYQHKQLMHKFPSRERNNECLPITSEEGVKCNICGKLFSGVSNLKQHFAMKHKSVTTHPCNVGNCKMIFSTPHALKSHELQHSNMIFSCGMCEKHFFHRGIMEKHIYNAHRAAYESIVGDDKGSLFKETDLTSYTVKGATGTVCPRCKIKYPNIKAMKIHYFKFHETMG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00882404;
- 90% Identity
- iTF_00882404;
- 80% Identity
- -