Lsyp016753.1
Basic Information
- Insect
- Leptopilina syphax
- Gene Symbol
- -
- Assembly
- GCA_032872505.1
- Location
- CM065471.1:43524931-43530336[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2.1e-05 0.0042 18.8 3.6 1 23 52 74 52 74 0.98 2 17 1.6e-06 0.00032 22.3 3.5 1 23 80 102 80 102 0.98 3 17 5.4 1e+03 1.8 5.0 1 23 109 132 109 132 0.93 4 17 5.7e-07 0.00011 23.7 1.6 2 23 139 160 138 160 0.96 5 17 0.17 34 6.5 6.5 1 23 165 188 165 188 0.98 6 17 2.4e-05 0.0046 18.6 4.2 1 23 250 272 250 272 0.98 7 17 2.3e-06 0.00044 21.8 1.4 1 23 278 300 278 300 0.98 8 17 0.71 1.4e+02 4.6 4.4 1 23 307 330 307 330 0.92 9 17 0.00011 0.021 16.5 0.9 1 23 691 714 691 714 0.96 10 17 4.8e-05 0.0094 17.7 3.7 1 23 720 742 720 742 0.98 11 17 0.0041 0.8 11.6 4.4 1 23 751 774 751 774 0.94 12 17 0.0044 0.86 11.5 2.5 1 23 780 802 780 802 0.94 13 17 3.2e-05 0.0062 18.2 3.4 1 23 807 830 807 830 0.96 14 17 0.0011 0.21 13.4 1.8 1 23 836 858 836 858 0.98 15 17 1.2e-05 0.0024 19.6 0.7 1 23 862 884 862 884 0.96 16 17 0.0005 0.097 14.5 5.0 1 23 890 912 890 912 0.97 17 17 3.5e-05 0.0067 18.1 2.2 1 23 918 940 918 940 0.98
Sequence Information
- Coding Sequence
- ATGACCAAAAATGTGACAACCGAAAATATAAAAACCGAAAATCTGTTGACCGAAAATCTGATGACCGAAAAACTGATAACTGAAAAACTGATAACTGACCTTCAACCGACCGAAATCGAAGAAACGGCAAAAGAGAGCGAAACGGAAACAATTTTCACCTGCGAAATTTGTCACTACACTTTCAATCGAAAGAGCCGTCTCACTGAACACCTGCTCAGTCACAACGATTACAGACCCTACAATTGTTCAATTTGTCAAAGAAGTTTCAAGTACACGAAAAATTTGCGAAAACACATGAAAATCCACGAAACCCCAGACACTTTACACAACTGTAATTTATGCGACTATCAAACAAGATGGAAACGTTATCTCAAGACCCATCACATTCGAATACACATTCGAGAATATAAACTAACTTGCGACATTTGTGGAAAAAAATTCGGTTCCAAATCCTCATTGAGAGCCCACATGAATCATCACGAGAGAGAGGCGTTCAAATGCGTTATTTGCGGGAATTTCTGTCACAGTGAGAAAACACTCTACAATCACATGAAGAAGAAGCACAAGCTCGACAAGAACTACGTAAAAACCACTTGTCCATTCGGAGCCGAGGAGAATTTAAATCCAATTCCCAAGAAGCcaacaatgaaaataatttacgcGAGTGAAATTTGTGAAACATCATTAAAGCCCCCCGAGGCCAGTGAACTTTCGGAGAATACGAATAAATGCAAAACTACCCAACCACATCGATGTTCAATTTGCCAGaggatattcaaaaatttcattaatttacaaaaacataTGAAAAATCACGATTTAGAAAAAGCATTCCAATGTTCAATTTGCCAGAGGATATTcaaaaatgtcattaatttacaaaaacataTGAAAAATCACGAATCGAACACTGTATTACATAGTTGTAATCTCTGTGATTATCAGACAAAACGAAAAGCTTATCtcaaatttcattatattcgtaaaCACCCCCAgAAAAAAGATGATCCGCTCCGTCGTCAGGCGtacaagaaaatttcaattggcAACGAAAGTGTTTGGCTACCGGAATCACAGATCGAAGTGCTGAAGAGTCGACCATTTTGGACGACGAAATTATCGTTGAAAATCGAGGATGTTGAAAATGAAAGGAATGAGAAGCAGGAGATTTTAACGTACTTTCGAACTTTGAAACCATTGAATATTGTTGTTAAGGATAAATCAGGATCGATAATTGAAAATCGACTAGTATTACAGGAGGAGGAACGAGAGAAGGAAGAAGAAGATgcattatttacgaaaaaaggAATGAATTTTTTGGAGACACTCGAGAATGGTGATTTTAACGAAAATCAAATAATTCCACAagatgaaaatgaaactgaCAAGGAGGATGCAAATAATTCCTGTAATTTATCAACGGGTGTTGggggaaacaatttttcaaagaagaaaatTCGAATGACACACCAGTCGCTTCCAACTCTACTGAAGAGAAATCAACAGCCAGGagtggagaaaaaaaaaccagTCTACATAAGAAAAGTCCAACTCAATCGAAATGAAAAAACTGTTCTTCAAAATCCAGAGGCAAATTTACAATCTTTCATAATCATTCGAACAATCGCTCCAAAATCGTCGCAACAGACAAAATTAACTCCAGTGAAATTAACTCAATTGacgaatgtaaaaaaattaaatccacCAGCCACCAGTAACAGTATTTTGGTAAAAGTTATCAAAACAACGGAAAACAGCAAAGTTTGTacaaaaatggaatttttggaaaataaccAACTGGAAGAAAGGAGAAATGTAAAAACGGAATTGGAGAataaaaatgaggaaaatttaaaGGAAGGCTGTGAAAGAACAAAGGAgggaataaaaaaggaaaatacagAAACAGAAATGGTTGAAAatagagaaattaaaataaatgaaagaagtgaaataaatgaaggaaatgaaaaaaatgaagtaaatgagataaaaatggaaataaaagaagaagagaaTGCGAAGGAGGAGAAAATGGACGTTCTctacaaaaaattaaacgacGGAAAATTTACTTGTGACATTTGTCAAGCGACTTTTCCCCAAAAGAGCAAAATGCTCCGTCACCTAAAAGGCAAACACAGTTTTCACAGACCCTTTAAATGCTCCCTCTGTCCAAAGGCCTTCAAATACAAATGCGATCTAAAATCTCATCGTCTCGTTCATCAGGACCTCGATTCAAATTCAATGCATTTTTGCGATAAATGTGACTATCGTTCAAAAACAAGAAACAATCTCAAAGCCCACTACATCCGCAAGCACACCGAAGATTATAAATATTTCTGCGAACattgtggaaaaaaattcaaaatggaatGGGATTTGAAATTCCACCTCGGCACTCATGGTTCATTGCAGCATATGTGCGATATTTGTGGAAAATTCTACACCAGCAATTATTCACTCTACAAACATCGTAAAGTGACGCacttaaataattacaaatttcaatgTTCAATTTGCAATAAACGATTATTGACGCAAAAGAATCTCGACAATCATATGAAGCAGCATCAGAAAACGTACGATTGCAAGGAGTGTGGAAAGAATTTCTCATCGAAAAGATATCTTGCCTCGCACGCAACAATACACACGGAAATAAAACCATTCAATTGTCATGTGTGCGATAAAACATTTCGCACTGCACATTTACGAAATGTTCATCTCTACACTCACAGTGAACATCGACCGTATATTTGTGATTTATGCGGACAAAGTTTCAAGAGACGATACTATATGATGGAGCACAGGAAAAAACATCCCGACTCTCATCTATCATCGCCTCCGATTCCCCTCGGCAGTGACAGTTGTCCAAAATtcatcaatatttaa
- Protein Sequence
- MTKNVTTENIKTENLLTENLMTEKLITEKLITDLQPTEIEETAKESETETIFTCEICHYTFNRKSRLTEHLLSHNDYRPYNCSICQRSFKYTKNLRKHMKIHETPDTLHNCNLCDYQTRWKRYLKTHHIRIHIREYKLTCDICGKKFGSKSSLRAHMNHHEREAFKCVICGNFCHSEKTLYNHMKKKHKLDKNYVKTTCPFGAEENLNPIPKKPTMKIIYASEICETSLKPPEASELSENTNKCKTTQPHRCSICQRIFKNFINLQKHMKNHDLEKAFQCSICQRIFKNVINLQKHMKNHESNTVLHSCNLCDYQTKRKAYLKFHYIRKHPQKKDDPLRRQAYKKISIGNESVWLPESQIEVLKSRPFWTTKLSLKIEDVENERNEKQEILTYFRTLKPLNIVVKDKSGSIIENRLVLQEEEREKEEEDALFTKKGMNFLETLENGDFNENQIIPQDENETDKEDANNSCNLSTGVGGNNFSKKKIRMTHQSLPTLLKRNQQPGVEKKKPVYIRKVQLNRNEKTVLQNPEANLQSFIIIRTIAPKSSQQTKLTPVKLTQLTNVKKLNPPATSNSILVKVIKTTENSKVCTKMEFLENNQLEERRNVKTELENKNEENLKEGCERTKEGIKKENTETEMVENREIKINERSEINEGNEKNEVNEIKMEIKEEENAKEEKMDVLYKKLNDGKFTCDICQATFPQKSKMLRHLKGKHSFHRPFKCSLCPKAFKYKCDLKSHRLVHQDLDSNSMHFCDKCDYRSKTRNNLKAHYIRKHTEDYKYFCEHCGKKFKMEWDLKFHLGTHGSLQHMCDICGKFYTSNYSLYKHRKVTHLNNYKFQCSICNKRLLTQKNLDNHMKQHQKTYDCKECGKNFSSKRYLASHATIHTEIKPFNCHVCDKTFRTAHLRNVHLYTHSEHRPYICDLCGQSFKRRYYMMEHRKKHPDSHLSSPPIPLGSDSCPKFINI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00882380;
- 90% Identity
- -
- 80% Identity
- -