Lsyp016758.1
Basic Information
- Insect
- Leptopilina syphax
- Gene Symbol
- -
- Assembly
- GCA_032872505.1
- Location
- CM065471.1:43545729-43555279[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 7.1 1.4e+03 1.4 0.7 1 10 134 143 134 157 0.75 2 22 1.7e-05 0.0033 19.1 1.3 1 23 163 185 163 185 0.98 3 22 6.4e-05 0.012 17.3 0.4 2 23 191 213 191 213 0.96 4 22 0.02 3.9 9.4 0.5 1 23 218 240 218 241 0.95 5 22 1.3e-06 0.00025 22.6 0.4 3 23 249 270 247 270 0.95 6 22 1.2e-06 0.00023 22.8 0.5 1 23 276 298 276 298 0.98 7 22 2.4e-05 0.0046 18.6 0.4 1 23 304 326 304 326 0.97 8 22 1.7 3.2e+02 3.4 5.2 2 23 710 732 709 732 0.93 9 22 9.6e-07 0.00019 23.0 0.8 1 23 738 761 738 761 0.97 10 22 0.0077 1.5 10.7 1.6 1 23 836 859 836 859 0.93 11 22 4.5e-06 0.00088 20.9 0.8 1 23 865 888 865 888 0.97 12 22 0.082 16 7.5 1.9 3 23 924 945 922 945 0.95 13 22 2.8e-05 0.0053 18.4 4.3 1 23 957 980 957 980 0.97 14 22 0.00061 0.12 14.2 2.0 1 23 1013 1036 1013 1036 0.96 15 22 0.0001 0.02 16.6 0.6 3 23 1043 1063 1041 1063 0.96 16 22 0.0037 0.73 11.7 2.6 2 23 1078 1100 1077 1100 0.94 17 22 8.2e-05 0.016 16.9 2.5 1 23 1106 1129 1106 1129 0.96 18 22 0.00024 0.046 15.5 1.5 3 23 1136 1157 1135 1157 0.96 19 22 3.2e-05 0.0061 18.3 0.7 1 23 1162 1185 1162 1185 0.94 20 22 0.00077 0.15 13.9 0.2 3 23 1193 1214 1191 1214 0.95 21 22 7.6e-05 0.015 17.1 2.6 1 23 1219 1241 1219 1241 0.97 22 22 0.00023 0.046 15.5 2.7 1 21 1247 1267 1247 1269 0.95
Sequence Information
- Coding Sequence
- ATgccaaatataaaaattgaaaatacagaGGATCTTTCAAGCGCAAGCAATAATAACGAATCAAATCTAATCGAAGAAGTTGATATCAAATACGAAGAGTTCGATCCGGAGAATATCGAGGAATTCGATCCTGAAAATCAATTCGAGGAATTTGAACCTGAAAATCAGTTCGAGGAATTCGATCCTGAGGGTAACTTTGAAGAATTCGAACCTGAGGTTAATGAGGAGGAGGAAGAAGAAGACACTTATTATGATAACGAAATTCAGTTCGAAGAAGTAACGATACAAGCGGACCAAGTTGTCAATTCTTCCGaagaggtaaaaaaaaaaacggacGAAACGCCCACGAAACGAAAGCGCAAACCTCGCAAACCCCGCGCACCAGCACCAAAAACCGAATTCCACTGTGAAATATGCGGTgcaattttcctcaaaaaaataaTCCTCCAATCGCATTTCACTCGCAAGCACTCCGAGCACTATAATTTCTCCTGCGATATTTGtgagaaaaaattcaaagtcaaaGGCGATCTCACAACACACAAGCGATTACACAACGAACCAACGGCCGTGTGCGACGTCTGCGGAAGAACCTACAAGAACAGTCGCTATTTGTATCTCCACCAAAGATACGCTCATTTTACAACAGAATTTCCCTGCAGTGTTTGCAAAAGATTCATGGCAACGCAGGAGAATCTCGATCAACACATTGCCCTCCATCACACGCGAAAAGAACGCGTCATTTGCTCCGAATGTGGAAAAAGTTATTCATCGAGGGACACACTAAAGCGACATGTTCGCTATGTTCACAATAAAATGCGCACGTACGAGTGCGAAGTTTGTAGCAAGAGATTCGTGAGAAGATCCGAACTCCGTCAGCATTTACTCATTCACACGGGAAAACGGCATTTCGCCTGCGATATTTGCGGACAAAAATTCACCCAAAAACCAGGATTAGTGAGTCATAGGAAAAAGCATCCTGGAGAACATCCACCCCTGCCAATGGAAATTCGAGAATTCCTTTCATGGAAAAAATGGGAAATTCGAGAAGAAGACGACGAGGAGCTAAAGGATAATTACAAAacgAAACTGACCAGATggcataattattataagtcaTTAAAGAGTAAAATTCAACACAATGACCATTCAACTCCAGTGAATCGATTTCCTCGCCTTGGAAATTCAAATCTACACTCAAAATCAGTTGAAAACAAGAATTCAATCGAAGTCAACGGAAAATTGGCAGAAAAATCGAAAGAAACGCCCAACAGTTTTTGCGAAAATCCAAATACTTTGGAGACAATAGAAATATCCGATATCGAGGAATTTGATCCAGTTTCGCCTAGTTCCATATATTTCGAAAACGAAAATGTGTCCAAGTATTTTGAACAAATCAACGCCGAGGAATTTACCGTAAATAGAGAGATTTCTTCTAAAAAACGAAACGAAACTTCGGAAATTGAGGAAATCGATATTGAGGGTTTTGACTCAAACAGTAAAATTCTATCGAATAATCAAAATGTTGTTTCGAagggagaaaataaaaaagaagaagaaatggaaaaagaaaaggaaaaaaaagaagaagaagaggaagaagaagtcGATATCGAGGAATTTGAcccgaaaagaaatttttctcgaaatcaAAATACTTCAGAATCGGAGGAAATCGACATCGAGGGCTTTGATTCACTATCGAACAGTAACGACGATTCTTCAGCGAAAAAAAAGTCATCAGACTCTGTAGAAATTGATATCGAGGGAAACGattcatttttcactgataGCGACAAATCGTCGACGGGAAATCCCAAAGGAATTGCAGAAAATAAAACTGTTCGACTGCAAAATATCATAATACttcatggaaattattttcatccaaTGCCAAATAGTGGACCACCAGTGAAAATACTCGAgaatgtgaataaaattattccaaacatTCAATTACCAAACAATCAATGTTCAACAAACAAATCACAAAATCCAACATTCAAAATTGTTCCAACTCTCGTTCCAATCGATGTCAATTGGCTAGCGTCAAGTGCCAAGAAAAATCAATCAAAAAAAGTTCCAAGGGATAATGAAGGAAAAGCAACTACACCGAAAAGCGAATTAACCTGCAatgtttgtttgaaaaaattctcctgTAAGCAAACACTAAAAACCCATTTCATTCGAAAGCACAccgataattataaattctccTGTAAAGAATgcggaaaagaatttaaaatctgGGGCGAATTGAGAAATCACATGAAAAAGCAGCACAAACGGGACGAAACGGATCTGAAAGAGGGAATATCATCatcggaaaataaaaaacaagtaaGACACAAAGAAACCAACGATTCTCTATCGACAGAAAGTGAAATGTTTTCCTTAGTTTCACAAAATAATTCCGAAAACGAAATTTCCCAGAAGGATCCACTCGCAATAACACAAAACGAAACAGATCTGAACAATTCACAACCAAtcgttgataaaaataaatttatctgtaaaatatgttcaaaaactTTCTCCTGGAAGAGCACCTGGAAATCCCATTTCATTCGAATGCACACCGACAATTATGAATTCTCCTGCGAGGAATGTGGCAAACAATATAAACTTTGGGGCGACCTGAGACATCACATAAGAGTACAACACAAAAATCCAAACGAACCCGATCCCCAATCTGGTGTGCCAACAAGAAATCGAAAAAGAGTCCGTCACAAAAAAATCGATCCCCTCTCCACTGAAAGTACAATGTTCTGTAAAAATTGCAACAcaagttttcaaaatataatcgAATTTCACAAGCACATTGACAGTGTTCACGTGAAAATTAAAGACGCCCAAGATGGCAATAATTATTCCTGTGAATTTTGCGGAACCTCCTACAAGAATAAAAATCATCTCAATAATCATTTGCGGCAACGACACAATGTTGTCTTAAATCGAGAAGCAGAGAGAACGAAAGAAATTCCCGAGGTAAATAAAGTTTCCCAAAttgaaaacaaacaaaattcaaaagagAAATTCTATTGTGAAATTTGTGGtaaagttttcgagaaaaaacgcCAATGTATCCAGCATATGCAACTTATTCATTCGTCGACAGAAATGGCCTGTAACGAGTGTGGCAAACAATTCgataaaagaacaaaattaattaaacatctCCAGGGTCATGAATATCGGAGAAAACACGGCCCAAAAAAACCCCAGGAATGTACCTGTGAAATTTGTGGTCTTACAGTACGATCTCGAGCGACACTAAATGTTCATCATCTGCGTAAACACTCTCAAGAATTTAACTTCCCCTGTAAACATTGTTCGAAAATATTCAAAGTTCGTGGCGATTTGACGACGCACACGAGGCTAAATCACAAGGAACCGCCTGCAATCTGTGAAGTTTGTGGGAAAGTGACAAAAAATAAACACTCACTCTACATTCATCAGAAGtacaatcattttcgaacaGCGTTCATTTGTCCGATTTGCAATAAATGTTACGCCTCACAGGAGAATCTCGATCAACATGTTAATGAATATCATGCGAAAAAGGAGAGAATCTTCTGtgatatttgtaaaaatagttttatgaATAAAGGGAGTTTGAGAAATCACATTGCCATTGTGCATTGTGAAAAGACATTTGCCTGCGAGACTTgtggaaaattatttagtaGCAGCTATCGACTCAAGCATCATCTTCTCACGCACACGAATCTAAGGCCTTACATTTGTAACATTTGCGGTAAACAATTCAAACAAAAGCTCAGTTTACTCAGTCACATCAAGTGTCATCCCGAGGAACATCCACCGATTCCCACTTTTGACGTCGACCAACTTCTCAagactagaaaataa
- Protein Sequence
- MPNIKIENTEDLSSASNNNESNLIEEVDIKYEEFDPENIEEFDPENQFEEFEPENQFEEFDPEGNFEEFEPEVNEEEEEEDTYYDNEIQFEEVTIQADQVVNSSEEVKKKTDETPTKRKRKPRKPRAPAPKTEFHCEICGAIFLKKIILQSHFTRKHSEHYNFSCDICEKKFKVKGDLTTHKRLHNEPTAVCDVCGRTYKNSRYLYLHQRYAHFTTEFPCSVCKRFMATQENLDQHIALHHTRKERVICSECGKSYSSRDTLKRHVRYVHNKMRTYECEVCSKRFVRRSELRQHLLIHTGKRHFACDICGQKFTQKPGLVSHRKKHPGEHPPLPMEIREFLSWKKWEIREEDDEELKDNYKTKLTRWHNYYKSLKSKIQHNDHSTPVNRFPRLGNSNLHSKSVENKNSIEVNGKLAEKSKETPNSFCENPNTLETIEISDIEEFDPVSPSSIYFENENVSKYFEQINAEEFTVNREISSKKRNETSEIEEIDIEGFDSNSKILSNNQNVVSKGENKKEEEMEKEKEKKEEEEEEEVDIEEFDPKRNFSRNQNTSESEEIDIEGFDSLSNSNDDSSAKKKSSDSVEIDIEGNDSFFTDSDKSSTGNPKGIAENKTVRLQNIIILHGNYFHPMPNSGPPVKILENVNKIIPNIQLPNNQCSTNKSQNPTFKIVPTLVPIDVNWLASSAKKNQSKKVPRDNEGKATTPKSELTCNVCLKKFSCKQTLKTHFIRKHTDNYKFSCKECGKEFKIWGELRNHMKKQHKRDETDLKEGISSSENKKQVRHKETNDSLSTESEMFSLVSQNNSENEISQKDPLAITQNETDLNNSQPIVDKNKFICKICSKTFSWKSTWKSHFIRMHTDNYEFSCEECGKQYKLWGDLRHHIRVQHKNPNEPDPQSGVPTRNRKRVRHKKIDPLSTESTMFCKNCNTSFQNIIEFHKHIDSVHVKIKDAQDGNNYSCEFCGTSYKNKNHLNNHLRQRHNVVLNREAERTKEIPEVNKVSQIENKQNSKEKFYCEICGKVFEKKRQCIQHMQLIHSSTEMACNECGKQFDKRTKLIKHLQGHEYRRKHGPKKPQECTCEICGLTVRSRATLNVHHLRKHSQEFNFPCKHCSKIFKVRGDLTTHTRLNHKEPPAICEVCGKVTKNKHSLYIHQKYNHFRTAFICPICNKCYASQENLDQHVNEYHAKKERIFCDICKNSFMNKGSLRNHIAIVHCEKTFACETCGKLFSSSYRLKHHLLTHTNLRPYICNICGKQFKQKLSLLSHIKCHPEEHPPIPTFDVDQLLKTRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -