Lsyp016750.1
Basic Information
- Insect
- Leptopilina syphax
- Gene Symbol
- ZBTB41
- Assembly
- GCA_032872505.1
- Location
- CM065471.1:43512140-43517643[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 5.1e-07 0.0001 23.9 1.2 1 23 10 32 10 32 0.98 2 20 3.5e-07 6.7e-05 24.4 0.8 1 23 38 60 38 60 0.98 3 20 0.00015 0.029 16.1 1.6 2 23 67 89 67 89 0.97 4 20 4.2e-05 0.0082 17.9 4.2 1 23 94 116 94 116 0.97 5 20 8.5e-06 0.0016 20.1 1.8 1 23 125 147 125 147 0.98 6 20 4e-06 0.00077 21.1 0.9 1 23 153 175 153 175 0.97 7 20 3.7e-05 0.0073 18.0 1.3 2 23 182 203 181 203 0.96 8 20 2.1e-06 0.00041 22.0 3.5 1 23 209 231 209 231 0.98 9 20 0.011 2.1 10.3 0.4 1 23 312 334 312 334 0.94 10 20 7e-07 0.00014 23.5 3.4 2 23 341 362 341 362 0.97 11 20 4e-06 0.00078 21.1 5.7 1 23 391 413 391 413 0.98 12 20 0.00023 0.045 15.5 4.8 2 23 419 440 418 440 0.97 13 20 0.00089 0.17 13.7 0.1 1 23 445 467 445 467 0.98 14 20 6e-06 0.0012 20.5 2.2 1 23 475 497 475 497 0.98 15 20 0.027 5.3 9.0 1.7 1 23 503 526 503 526 0.93 16 20 0.00019 0.037 15.8 0.3 3 23 539 559 537 559 0.96 17 20 1.1e-06 0.00021 22.9 1.8 1 23 565 587 565 587 0.96 18 20 2.8e-08 5.5e-06 27.8 0.2 1 23 593 615 593 615 0.98 19 20 2.2e-07 4.3e-05 25.0 0.9 1 23 621 643 621 643 0.98 20 20 0.0005 0.096 14.5 1.7 1 21 649 669 649 670 0.96
Sequence Information
- Coding Sequence
- ATGATCGCTCACAGTGAGATTCGTCCATTTGAATGTGAACTCTGTGGAAAGTATTTCAAACGATCGAGTACATTATCAGTTCATCGGCGAATTCACACGCGCGAGAGAAATTTCATTTGCGACGTTTGTGGGCGAAGTTTCGTTCAGGCCTCACAATTGGCAACGCATCATCGCAGGCACTTTGAAAAATACACGAGACGCTGTGAGATATGCAGTAAGGGATTTTTCACAAATTCCGAATTACATGGACATATGAATGTGAAACACGGCGCGAAGGAGCATGTTTGTCACGTGTGCGCAAAATCATTTCCCAATAATCACACATTGGTTCgtcatttaaaaattcacgatcCCAATTTTAAACCAGTGAAACATCAATGTGAATTTTGTGGTAAAACATTTGCCTATAAGAATTCGTTGGTTGTTCATGTGAAATCGCACACGGGCGAGAATAAATACGATTGTCATCTTTGTGGAAAATCTGTCTCGTCAAGGGGATCACTTCAGGATCATTTGCGATTGCACGGTGGGGAGAAATCGTTGATTTGCGATATTTGCGGCAAGGCCTTTCATAAACGAACAACACTCGTTGTACATAAAAGGACGCACACTGGCGAGAAACCATATACCTGTGATACTTGTGGAAAATCTTTCACTCAACATTCAACATTAGTTATACATAAACGTTATCATACCGGCCAACGACCTTATCACTGCAATAATTGTGACAAATACAATCAGCTTTCCATTCCGGATGTGTATTGTGATAAGGAGTCGGCAAAGAAAGTCTTCAGTCCAAAAGCGAGCGGAAATGATGAGAGGCTGAAGGGTAATGATATCAAGAAGGAGGGCAACGATCTCGATATAGAGGAAGATGACTatgaggaggaggaggaggaagaagaagaggacGAGGAGGAAGAGGAAATCGTCTTCAACTGTTCGAATTGCGCAATGTCCTTTGAATCTCAAAAGCAACTCGACAATCACGAGGAAGAGCATAAGGGTAAGCGAAAAAATACCTGTGCCCATTGTGGTCGTGTTTTTCGGACCTATGTAAATTTACGTAAACACATGAAGAAGCACACGAGTCGAAGAGGTCGAAAACCAGGTTCCAATAACGTAGGTCGACCGCCGCTGAAAGTAAAAGAGGAAAAGCACGACGAGGAATTCGTTTGTAAAACCTGCAACAAAATATTCCGTCACAAGAGCAACTATCAAAAGCATCTTCTCCGTCACACTGTCGGCGATCTCACTTGCAAACATTGTCCGAAAAAATTCCGACTTTTCCGCGACCTCACGAGGCATGAGAAAACACATTTCTATCCCAGTTACATGTGCAAGGAGTGCGACTACGAGACAACAGTTCTCGCCGCCCTCAGTATTCACATGCTCCGCCACACCGACAAGGCCGATCTCCCCTTCAAGTGCACCGATTGCGATAAACATTTCCGCAAGGCAATCGATCTACAAGAACACTACAACATTCATTCCGGCGACAAACCCTTCATTTGTCAAATTTGCGGCAACGCCTTCTACCTCAGACGACAATTATCAGCTCATTGCCGTCGAATGCATCCCGAGATGAAAGCAAATAAAGTCACGAGTACAGCGTGCGATATTTGTGGTCGTGTTCTCGCCACAAAAAGATCTTTGTTCCGTCACAAGGAGAGTCATAATCCAACGAAACTCTATCTCTGCGATTATTGTGGGAAAAGTTTGAGCAGTGCCGAGCATCTCAAGAAACATCGACGTATTCACACCGGTGAAAAGCCGTATGTCTGCGATATTTGCGGAAAGGGCTTCACCGACTCGGAAAATCTTCGAATGCACCGAAGAGTACACACCGGTGAGAAACCCTATAAATGCGATCAGTGTCCAAAGGCATTCAGTCAGAGGTCAACACTCACTATTCATCGACGTGGACACACCGGTGAACGACCATACGTCTGTCAAATTTGTCATCGCGGCTTCTCCTGTCAGGGAAATCTCACCGCTCATCAAAAGTCAACCTGTGTTTAA
- Protein Sequence
- MIAHSEIRPFECELCGKYFKRSSTLSVHRRIHTRERNFICDVCGRSFVQASQLATHHRRHFEKYTRRCEICSKGFFTNSELHGHMNVKHGAKEHVCHVCAKSFPNNHTLVRHLKIHDPNFKPVKHQCEFCGKTFAYKNSLVVHVKSHTGENKYDCHLCGKSVSSRGSLQDHLRLHGGEKSLICDICGKAFHKRTTLVVHKRTHTGEKPYTCDTCGKSFTQHSTLVIHKRYHTGQRPYHCNNCDKYNQLSIPDVYCDKESAKKVFSPKASGNDERLKGNDIKKEGNDLDIEEDDYEEEEEEEEEDEEEEEIVFNCSNCAMSFESQKQLDNHEEEHKGKRKNTCAHCGRVFRTYVNLRKHMKKHTSRRGRKPGSNNVGRPPLKVKEEKHDEEFVCKTCNKIFRHKSNYQKHLLRHTVGDLTCKHCPKKFRLFRDLTRHEKTHFYPSYMCKECDYETTVLAALSIHMLRHTDKADLPFKCTDCDKHFRKAIDLQEHYNIHSGDKPFICQICGNAFYLRRQLSAHCRRMHPEMKANKVTSTACDICGRVLATKRSLFRHKESHNPTKLYLCDYCGKSLSSAEHLKKHRRIHTGEKPYVCDICGKGFTDSENLRMHRRVHTGEKPYKCDQCPKAFSQRSTLTIHRRGHTGERPYVCQICHRGFSCQGNLTAHQKSTCV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00881458;
- 90% Identity
- iTF_00881458;
- 80% Identity
- -