Lsyp030332.1
Basic Information
- Insect
- Leptopilina syphax
- Gene Symbol
- -
- Assembly
- GCA_032872505.1
- Location
- CM065474.1:22577015-22578674[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-08 1.7e-05 25.8 0.0 1 36 15 51 15 56 0.94
Sequence Information
- Coding Sequence
- atgcctaaacataaaaagaaaaatacaaatcgTGGAAGCTGGACAGAAGATGCTATGAAAACAGCAATTCAGTTGATATTatctaaagaaaattcaatCAGGAAAATTGCAAAACAGTACGATATTTCAGTTAGTACTTTACATGAAAAGGTCAGTGATTTAAAGAAGGGATTGGAAATTAACATGTCTCCAAAATTGGGAAGATTCGAATGTACTTTTcctattgtttatgaaaatgcACTTGTTGGACATGTAATTAATCTCGATAAACGTCTTATGCCTTTttttataAAGAGACATCCAGAATTATCGCTTCGAAAGCCTGAGTCTACCAGTCTTGCTCGAGCAGTAGGCTTCAATAAACCacaagttgaaaaattttttacaaaatatgatGAACTTCGAAAAAAGTACAATTTCCAATATGACCGAATATTTAATTGTGATGAGACAGGAATTTCTTGCGTTCACGAAAACTCGATGGTTATATCGTTGAAAGGAAAACGTCAGGTCGGAAAACTCACATCGCTAGAAAGAGGAAagaatattacaattttgttcTGTATGAGTCCATCAGGTGTATTCATTCCATCTATGTTCGTTTTTCTACGTCAGCGGATGAATATGCGGTTAATGATCAATTCTCCAGAAGGAAGTTTTggtgttgtacagaaaagtggtTGGAAGGACGGTAAGCTGTTCCTCATTTGGCTAAAACACTTTGTTGAGAAAACGAAACCAACAGCAGATTCTCCTGTTCTTCTAATATTAGATGGTCATGGCAGTCACAAGGATTTCGAAGTCATCTCTTTTGCTCGTGCTCATTATGTTCACATGCTAAGTTTGCCACCACATACCAGCCATAAGCTTCAACCTCTAGATAGAACGTTTATGAAACCTTTTAAATTGAAGTATTCAGAGGAATGTGCATTGTGGATGAGGAAAAATCCAGGTCTCAGAATCAGCGAATACGAAATTGCAGGATTGATACACGAAACGTACAAAAAAGTATGCAATCTAGAGGTAGCAAATCATGGATTTTCTTCCACAGGAATTCATCCATTTTATCCTCAGATTTTCACGGATGCGGACTATGAACCCTCTATGACGACTGATGTACCTCAGAataaaattgtggaaaataataCGAATTTATTGTTACAAGAAAATAATTCTCCTCCTGAAGCCGAAATCTTGTCACAGATTGAACAATTGATGCCACTTCCTGATTCAACTGAACGTAGAATAGTTTCACGAAAAAGACGAAGCGAGCGTTCTGAAATTTTCACTGGTAATGAATATTTTGAGGCCACAAAGCGAAAACGTACAGAGAAAGAAGAAGCCATAaagcaaaaagagaaaaaggaacaggaaagagaagaaaaaaagaaagcttTAGAATCTAAAAAGAAGGagaaagagcaaaaaaaattcaaagaaaggaaagtcaagaaaaaaagaagaaagaaaagaagacagaggaaaggaaaaaaagaactcggaaaattgaaaaaggaaaaCAGGGAAAAGCAAAAGAAACGAGAGCAGTAG
- Protein Sequence
- MPKHKKKNTNRGSWTEDAMKTAIQLILSKENSIRKIAKQYDISVSTLHEKVSDLKKGLEINMSPKLGRFECTFPIVYENALVGHVINLDKRLMPFFIKRHPELSLRKPESTSLARAVGFNKPQVEKFFTKYDELRKKYNFQYDRIFNCDETGISCVHENSMVISLKGKRQVGKLTSLERGKNITILFCMSPSGVFIPSMFVFLRQRMNMRLMINSPEGSFGVVQKSGWKDGKLFLIWLKHFVEKTKPTADSPVLLILDGHGSHKDFEVISFARAHYVHMLSLPPHTSHKLQPLDRTFMKPFKLKYSEECALWMRKNPGLRISEYEIAGLIHETYKKVCNLEVANHGFSSTGIHPFYPQIFTDADYEPSMTTDVPQNKIVENNTNLLLQENNSPPEAEILSQIEQLMPLPDSTERRIVSRKRRSERSEIFTGNEYFEATKRKRTEKEEAIKQKEKKEQEREEKKKALESKKKEKEQKKFKERKVKKKRRKKRRQRKGKKELGKLKKENREKQKKREQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00882876; iTF_00882884;
- 90% Identity
- -
- 80% Identity
- -