Lsyp027165.1
Basic Information
- Insect
- Leptopilina syphax
- Gene Symbol
- TIGD1
- Assembly
- GCA_032872505.1
- Location
- CM065473.1:43123249-43124836[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.3e-09 1.9e-06 28.8 0.0 3 38 20 54 19 58 0.94
Sequence Information
- Coding Sequence
- atgcCTCGAACCTACAAAAAAATTCCTGGAAAAAGACAAAGAAATGCAGTGAACTTCGAACAACTTGAGAAAGCGATTGAAGCTGTCAAGAATGGAATGTCTCGACGAATGGCAGCAAAGGAATTTAATGTTGACAGAACTGTTTTACAGCGGAGGATGAAagataattctataaatttacatCCTGGACCTGTATCTGCGTTATCGCCAGAATTAGAACAAACGTTTGCAAACCGTTTATCGCTATGTGCTGATTGGGGTTATCCTTTTGAACTCCAAGAAATACAGACATTAATTGCCAACTACCTTCAATCAAATggtattaaaattcctaaattcaAGAACAATGTTCCTGGCATTGATTACGTAAAAGGTTTCATTAAGCGTCATCCAGAACTGTCACACCGTTTCGCAAGAAATATTAAACGGTCTAGAGCAGCTGTCGATTATGATTGTCTTAAGTCGTTTTTTGATAACATTTCCTCCGAACTCGAAAATGTTCctcctgaaaatatttttaattacgacgaaataaattttaccgaCGATCCAGgcataaaaaaagttgtttgtcgTCGAAAAGCAAAATATGTGGAACGTGTTATGAATTCGACAAAATCGTCGACTTCTGTAATGTTCGCAGTCAATGCAGCTGGCTTTTTGTTACCGCCATACATTGTTTACAAAGCCAAACATTTATATAACACATGGATCAGTGGTGGACCCACAGGAACCCGCTACAATCGATCGCAAAGCGGCTGGTTCGACAAGGATTCCTTCATCGATTGGCTCGAAACAATAGTGATACCGCACCTTCGTCGCCTCGAAGggaaaaaattcattattggAGACAATCTGGCTGCTCACATTTCATTGAAAGCCATCGAAGCGTGTGAAATTCATAACATCCACTTTATTTTTTTGCCATCAAATTCGACTCACTTATTGCAACCACTTGATGTTGCCGTTTTTGCTTCATTCAAAAGCAATTGGAGGGACATACTTCTAGAATGGAAAAGAGGTCCAGGGCAAAATGAAGCTACACttccaaaagttttttttccttcattgCTAAGGAAAATGTTGGAAAAAATTGGCCTCGAACGGATTAATCAGAATGTGAGAAGTGGATTTCGAAAATGTGGAATATTTCCACTGAATCCTAATGAAGTCTATGCCAGATTGCCTCCAGGTTCTTCAAATGATCAGCCGAATGATGCTGTCGACAACGTTTTCATCAATTATCTCTCAGCGTTGCGTGCTCCTCCTACTACTTCTGAACGAGGGAGAAAAAAACGTCTTTCAACTGCGCCGGGGAAAAGCGTTTCAGTAGATGAATTGAGTAATCCACTTTCAGGTCCATCTAATTCTGCTACCGACACACCATCTACAACACAAAATGCTACACGAAAAAGGGGATGGCCACAGAAATCCAAAAATTTGCGAAATTATGCCGCCTGTCCTAGACGCAAAAATGCAAGACGAAATTGTCGCTCACATTCCATTGTTGAGTCCGACGACTAA
- Protein Sequence
- MPRTYKKIPGKRQRNAVNFEQLEKAIEAVKNGMSRRMAAKEFNVDRTVLQRRMKDNSINLHPGPVSALSPELEQTFANRLSLCADWGYPFELQEIQTLIANYLQSNGIKIPKFKNNVPGIDYVKGFIKRHPELSHRFARNIKRSRAAVDYDCLKSFFDNISSELENVPPENIFNYDEINFTDDPGIKKVVCRRKAKYVERVMNSTKSSTSVMFAVNAAGFLLPPYIVYKAKHLYNTWISGGPTGTRYNRSQSGWFDKDSFIDWLETIVIPHLRRLEGKKFIIGDNLAAHISLKAIEACEIHNIHFIFLPSNSTHLLQPLDVAVFASFKSNWRDILLEWKRGPGQNEATLPKVFFPSLLRKMLEKIGLERINQNVRSGFRKCGIFPLNPNEVYARLPPGSSNDQPNDAVDNVFINYLSALRAPPTTSERGRKKRLSTAPGKSVSVDELSNPLSGPSNSATDTPSTTQNATRKRGWPQKSKNLRNYAACPRRKNARRNCRSHSIVESDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00881938; iTF_00882878;
- 90% Identity
- iTF_00881938; iTF_00882878;
- 80% Identity
- -