Lsyp020040.1
Basic Information
- Insect
- Leptopilina syphax
- Gene Symbol
- Pogk
- Assembly
- GCA_032872505.1
- Location
- CM065472.1:22221768-22238198[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.9e-10 1.5e-06 29.1 0.1 1 38 19 56 19 61 0.95 2 2 0.77 1.2e+03 0.7 0.0 13 22 133 142 132 145 0.85
Sequence Information
- Coding Sequence
- atgccACGAATTTATAAGCGAAAAGCAGGTGTAGTACCACGGACAGTAACGTGGACTGAGGAAGCACTGACAGAAGCTATAAAGGCAATTGAATCAAATAGTATGAAAACAAAGACAGCAGCAAAGCAGTTTGGTATTCCGTCCCGCACATTACGTAGACGCTTGAAAAACGCAGACTTAACGAAACATAATTTGGGAAAAGGACCCATTCTAGGatacgaaaatgaaaaaaaattagttgacCATATAAAAAATCTCGAGAAAGATGGATTTCCTTGCACTCGTATGGATATTCGGAGAATGGCATATCAGCTAGCCGTGAAGTTGAAAATATCACACAATTTCAACGAGGTTACAAAATTGGCCAGAAAGCAGTGGCTGTTgtcatttttagaaagaaacAAGCAATTAAGTGTCAGGCAAGCTGAAAGAATATCTCGTGCACGAGCCGTGGGATTCAATAGAGAGGagataggaaaattttttgacttgTTGGAACATACCCTAATAACCAACGATTTAATAGGAAAACCAGACCGAATATTCAATATGGACGAAAGTGGAGTTCAAATGAACAACAAACCCGAGAAAGTTGTGGTCACTAAAGGTGCCAAATTAGTACAACAAGTTACTTCGAGTGAAAGAGGAGAAACCATATCTGTTGTTGCTTGTAATAATGCGGAAGGTAGATTTTTGCCTCCAATCATCATACTAAAGGGAGTATACAAAAAAGACGAATTTCTGGATGGACTTCCGCCAGGATCCGATGCTTATATGAATAAAAAGTCTGCCTACATCAACACAGATCTATTTTATAAATGGCTGACAGAACATTTTATTCCACGAAAGCCTGCAggtaaagttttattaattctcGATGGTCATTCTTCGCACACTGCCAGCCTGAACACTCTGGAAGTAGCTAAAGAGATTGACGTGATTCTTCTTGGCCTTCCTAGCCATTCAACTCATGGTCTTCAACCTTTGGATAAATCGTTTTTTAAACCtttcaaaacatatttttcaagTGAACTGCGAAATTGGATgataaacaataaagaaaagaaaattaacagGTATCAATCTGCTTGCGGCATTCATCCATTTAATCCAAACATTATTCCCGACCACTATTTTGAGATTTCTGATGCAGCCAATAGATCAGTTGACACCGAGACTTTGGAAGAAGCGACTGGTGACATACCCGAGGTAAGTGATGTAGTAAATCCTAACAATCTTGTATCTGCTTCGTCTGAAAGAACAGCTATTAATGAATCTCAATTAATCCAGGTTGAAAATGTACCTGCACCATCAGCAAGCCAATGTGATAATCGGGCAAAAATATTATCTGTGATAAATCCAGTGCCCGTTGTGTTAAACgTCACTAGAAGATCTGCTAACATTATAATCAGTATGGGACTCGGCACTAGACTTGCCTTGGACTCCGCCCAGAAGCGCCTATCAATGTGTTTAATCTGCTTTGTTCCGCGTATAAGTGTGCATAAGAACGAAAACATGTTAAGCCTACTGACGTGCTTTAAACATTTTACCATTCATTTCCTTGTTTTTTATCCTGGAGCAGCAAAGGTAGACAaTGGGAAATTTCCAACCGGCGCGGATCCTCGCCTGTACCGACGCCGGAGTAGTGGTACTGGCTGGGAACCGCCTGCCTACCGCCCGAGAACTGGTATTCTACCAAAAGATGACTTGGCCAGGAGCTGGCTGGCCATCCGTCTCGGAACTGGCATTCTACCGCCCAGTAACCGGTCGCGAAGAGCCGTTCCGTGTATAATTCAACCGGCTGGGACCCGACACTGTACCGACTGCGGATCTTTCATTTCCTAG
- Protein Sequence
- MPRIYKRKAGVVPRTVTWTEEALTEAIKAIESNSMKTKTAAKQFGIPSRTLRRRLKNADLTKHNLGKGPILGYENEKKLVDHIKNLEKDGFPCTRMDIRRMAYQLAVKLKISHNFNEVTKLARKQWLLSFLERNKQLSVRQAERISRARAVGFNREEIGKFFDLLEHTLITNDLIGKPDRIFNMDESGVQMNNKPEKVVVTKGAKLVQQVTSSERGETISVVACNNAEGRFLPPIIILKGVYKKDEFLDGLPPGSDAYMNKKSAYINTDLFYKWLTEHFIPRKPAGKVLLILDGHSSHTASLNTLEVAKEIDVILLGLPSHSTHGLQPLDKSFFKPFKTYFSSELRNWMINNKEKKINRYQSACGIHPFNPNIIPDHYFEISDAANRSVDTETLEEATGDIPEVSDVVNPNNLVSASSERTAINESQLIQVENVPAPSASQCDNRAKILSVINPVPVVLNVTRRSANIIISMGLGTRLALDSAQKRLSMCLICFVPRISVHKNENMLSLLTCFKHFTIHFLVFYPGAAKVDNGKFPTGADPRLYRRRSSGTGWEPPAYRPRTGILPKDDLARSWLAIRLGTGILPPSNRSRRAVPCIIQPAGTRHCTDCGSFIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -