Lhet041965.1
Basic Information
- Insect
- Leptopilina heterotoma
- Gene Symbol
- -
- Assembly
- GCA_015476425.1
- Location
- JABAIE010000018.1:719411-737119[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.15 31 6.8 0.7 2 14 55 67 54 69 0.90 2 18 0.055 12 8.2 1.4 1 20 90 109 90 111 0.94 3 18 4 8.5e+02 2.3 0.2 2 8 155 161 154 162 0.86 4 18 2.2 4.7e+02 3.1 4.8 1 20 192 211 192 213 0.95 5 18 0.73 1.5e+02 4.7 0.4 1 12 219 230 219 233 0.84 6 18 0.018 3.8 9.7 3.2 1 21 295 315 295 316 0.95 7 18 0.018 3.9 9.7 3.0 1 20 413 432 413 434 0.94 8 18 0.25 52 6.1 1.3 1 15 440 454 440 456 0.88 9 18 0.00017 0.037 16.0 3.5 1 20 522 541 522 543 0.95 10 18 0.079 17 7.7 6.4 1 22 565 586 565 589 0.91 11 18 0.0073 1.6 10.9 1.5 1 22 603 624 603 624 0.96 12 18 0.0059 1.3 11.2 1.9 1 21 630 650 630 651 0.95 13 18 0.0029 0.62 12.2 1.1 1 19 688 706 688 708 0.96 14 18 0.046 9.7 8.4 1.0 1 21 726 746 726 747 0.95 15 18 0.0041 0.87 11.7 2.0 1 22 753 774 753 774 0.96 16 18 0.0006 0.13 14.4 1.3 1 19 808 826 808 829 0.94 17 18 0.021 4.4 9.5 3.4 1 21 846 866 846 867 0.96 18 18 0.87 1.8e+02 4.4 6.2 1 21 873 893 868 894 0.86
Sequence Information
- Coding Sequence
- ATGATTGCGGATTTGCATGTATCTGTAAAAGTACAATATTCAAGCAACAAAAAAATTTGTCAACAATCGAAATTTTGTAATGACGAATATTTACCGCAATCTTTACTGATTAAAAAAATTGAGACTCTTCGACAACCAACATTACTGCAAGAAGAGAGAAGTGTTTGTCAATATTGTAATAGAAATTTCAGTAGGAAAAATGCGAAATCATTTCATGAAAATAAATGTTTCATGAATCCATCAATTCTCGCCAAGGAAAAACGAATATATAATTGTGAAAACTGTGGTTACAGTTCTAATCTGAGGCAACAATTTAAAAGACACAAATCTTCCGATTGTGGCGTTGAACACAAATGCAAACGATATGAATCATTTAATGTACAAGAAATGCCATTTTTGTCGATAATCAATTGTCGAAGTCTAAGATCACCATCGCAAGATTTCAATCAAGACACATCATTGGTTTGTCACTATTGTGGAAGAGCAAATTTCGGAGCGGTTATTGGGAAAAAGCTTCACGAAAAAAATTGCTCTCTCAATCCACTAAATCACGAGGAAAAGAAACAATTAATGTTTAAATGTGGGAATTGTGCTTTTGGTTGTAATCGAAAATCATATTTAAATTACCACAAGACACACGACTGTGGAAAGGAGCATATTTGTCACAAGTGTAATAGACATTTTGGATCATTAAATGATGACTCGTTCAAAATAAAATTGCCAATTTTAATGGTTCGCAAACGTGAAAGTCTACTTCTGCAAGCGCAAGATATTAAAATGTGTCTCCACTGTGGTAGACAGAATTTCGGAACAATTGTTGGTAAAAAGAATCACGAATTAAAATGTTCTTATAATCCAAAGAATTTAAGAGCACAGAAACAATTTAATTGCAGCGAATGCAGCTATGGTTGCAATGATAAATTTCAATTGAAATATCATATGAAAAATGAGTGTGGAAAAAGTCAAATGTGCAATACTTGTAATAGAAATTATGATAATTTATTCAAGATAAAATTGCCAGTTTTATCAGTTATCGGTTACCAAAGTCTAGCACCAACATCATTGCTATTACCATCATCATCATCATCATCATCACAAGAAATCATCGAAGGCACAACATTGGTATGTCAACATTGTGGCCGAGCAAACTTCGGGGCAATTGTTGGAAAGAAGCTCCATGAAAATAATTGTTCTTTAAATCCAAAAAATTCAACAGATAAGAAGAAACAAACGCCGTTTAATTGCAGTGATTGCAGTTATGGTTGTAATCGAAAATCGGATTTAAAATATCACAAGATTCATGATTGCGGCAAAACGCATAAATGTCACAAGTGTCAAAAAAATTATGGATCACGAAGCGATGTAAAATTTATGACAAAATTTCCATTTCTATCAATAAAAAGTATCGAGGAGTTAACATTGCCAAACTATATTAAAGAGGAGAGCTTCTTCTGTCAATATTGTCAAATGGGTTTTGGAGGAGTGAAAGGAAGAAAATATCACGAATTCAAATGTGCTCTTAATCCAACAATTAGAAATGGAAAGAAAAGATGTTATCCAACGTTTACTTGCAACGAATGTGGCTTTAATTGTAGAAATAAAAGCACTTTAACTAGACATCAAACCTACGATTGCGGAGTGACGCATTTCTATTATCTACAATACGGAGAATCATTTGAACATGAAGATCCATATAGATGCAGATATTGTCACAAGATTTTTGGTCAAATATCATCGAAAAATCGTCATCAAAATAATACGTGTCACTTGCATCCAATGAATTTCAATAAAAAATCAGATAAGCTATACACATGTTCTGCATGCGGTTCTAATTTTAATTTTAAAAATAATTATCATCGACACATTAGAGTTGATTGTGGAAAGATTCACACTTGTAAAAATTGTCATAAAATTTACAACGCCTACTCGGCTCTTCTTAAACATTATCGAGTATCAGGAAGCGGAATCAATTTTCAAGATCAGGAAATATCGATTCTAAACCCCGATAACACAGCCGACTTTTCGCAATTAGGCGATGAAGAAGCAGGAACTGGAGAAGAATTTAAATGTCGATATTGTTCGAAAATATTTTCCCGCAGACGTGCGAGAAATCGTCATGAAGTTCATACATGTTTTTTGAATCCCGTAAAGAGTAAAAGCGCATTTCCCAAATTGTATTCATGTGAAAAGTGTTTTTCCAGTTATGCCCATAAGGGCACACTTTTAGATCATTTGAAAAACGATTGCGGAAAATGTCATCAATGTAAACGTTGCTTCCGCATTTATTCACAACTGAATGGCTTGAAACGTCACTGGCGAACCGGAACTGGGACGAATTTTCAAGAACATAAAACATTGAACACAGAAAATGAACCGGATTTTTCACAATCAGGTGAAGAAGAAAAATCCTCGGGAGAAGAATTTAAATGTCGATATTGTGGTAAAATTTTCTCGCAAAGCGGAGGGAAGAAACGTCATGAAATTCATTCGTGTTTCTTGAATCCTACAAGAAATAAGAGCAAATTTTCTAAATTATATTCGTGTCAAACTTGCTTCTCCACTTACACCCATAAGCATAATCTTGTCGATCATTTGAGAAATGACTGCGGAAAATGTCATCAATGTAAATGTTGCCTCAAAATTTACTCTCAACTGAGTGGTTTGAAACGCCACTGGCGATTGGGAACTTGTCAAGGAACAAATCCATCATAA
- Protein Sequence
- MIADLHVSVKVQYSSNKKICQQSKFCNDEYLPQSLLIKKIETLRQPTLLQEERSVCQYCNRNFSRKNAKSFHENKCFMNPSILAKEKRIYNCENCGYSSNLRQQFKRHKSSDCGVEHKCKRYESFNVQEMPFLSIINCRSLRSPSQDFNQDTSLVCHYCGRANFGAVIGKKLHEKNCSLNPLNHEEKKQLMFKCGNCAFGCNRKSYLNYHKTHDCGKEHICHKCNRHFGSLNDDSFKIKLPILMVRKRESLLLQAQDIKMCLHCGRQNFGTIVGKKNHELKCSYNPKNLRAQKQFNCSECSYGCNDKFQLKYHMKNECGKSQMCNTCNRNYDNLFKIKLPVLSVIGYQSLAPTSLLLPSSSSSSSQEIIEGTTLVCQHCGRANFGAIVGKKLHENNCSLNPKNSTDKKKQTPFNCSDCSYGCNRKSDLKYHKIHDCGKTHKCHKCQKNYGSRSDVKFMTKFPFLSIKSIEELTLPNYIKEESFFCQYCQMGFGGVKGRKYHEFKCALNPTIRNGKKRCYPTFTCNECGFNCRNKSTLTRHQTYDCGVTHFYYLQYGESFEHEDPYRCRYCHKIFGQISSKNRHQNNTCHLHPMNFNKKSDKLYTCSACGSNFNFKNNYHRHIRVDCGKIHTCKNCHKIYNAYSALLKHYRVSGSGINFQDQEISILNPDNTADFSQLGDEEAGTGEEFKCRYCSKIFSRRRARNRHEVHTCFLNPVKSKSAFPKLYSCEKCFSSYAHKGTLLDHLKNDCGKCHQCKRCFRIYSQLNGLKRHWRTGTGTNFQEHKTLNTENEPDFSQSGEEEKSSGEEFKCRYCGKIFSQSGGKKRHEIHSCFLNPTRNKSKFSKLYSCQTCFSTYTHKHNLVDHLRNDCGKCHQCKCCLKIYSQLSGLKRHWRLGTCQGTNPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -