Lhet042194.1
Basic Information
- Insect
- Leptopilina heterotoma
- Gene Symbol
- -
- Assembly
- GCA_015476425.1
- Location
- JABAIE010000018.1:578300-580732[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.066 14 7.9 2.8 1 21 22 42 22 43 0.94 2 11 0.05 11 8.3 0.1 2 20 115 133 115 135 0.93 3 11 6.9 1.5e+03 1.6 2.2 1 8 142 149 142 150 0.89 4 11 0.0063 1.3 11.1 0.5 2 21 241 261 240 262 0.92 5 11 0.09 19 7.5 1.0 1 23 270 293 270 293 0.88 6 11 8.4 1.8e+03 1.3 0.3 3 12 404 414 402 423 0.82 7 11 0.00019 0.04 15.9 0.4 1 23 431 453 431 454 0.96 8 11 0.0027 0.57 12.3 0.2 2 21 505 524 504 525 0.92 9 11 0.00083 0.17 13.9 1.5 1 20 635 655 635 657 0.95 10 11 9.5 2e+03 1.1 1.1 1 7 665 671 665 677 0.89 11 11 0.29 61 5.9 1.8 1 23 765 788 765 788 0.95
Sequence Information
- Coding Sequence
- ATGGAAGATTCGGAATACTTTCAATCGTCCAGTGAAAATAATAGGATAAAGCAGAGAGAGAAATATTTTTGTTCAAAGTGTCAGAAACGATATAAAAGTCAATTGGGTTTTTCGTCTCATTTAAAATTCAACTGTATTAAACTAGAAGAAGAAGACGACGACGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAATGTTCGGTTCAAACATCCAAGTTGTATACAATTAAGAAAAAGAGAGAGTCCCAAAATTAATATTCGTCCTTCAAAATTTTTGCCAAAAGAGCGACCAAGAGGACGAAGAAGAGAAATCAAATCTTCATTTCGGAAATTAACCCCAAATACCTGCTATTCATGTGGAAAACAATTCAACATAGAATATGGACTCGCCAGACACATTTCTGAAGGTTGTCTAAATTCCCTCTACAAATGTCCGTATTGCAATTATCAAGAGGATAATCAACTCCTAGGATTCTTTCACGTCATCAAAAAACATCCAGAATTAAAAGTTTATTTAATCAACAAATTCCGAGGCAAGGAGAAAACTCTTAGTCGAAAAATGGAAACATATTTACGCTCCGTTCCCGTTTTTCGACGTCCCTCAGCACAAAATCACACCGACGCTTCGAAAAAACCCCCAAACAATTGCGAAACGACAACAGATCAACAAAAAAATTCGCCAAACATTTCCGAAAATGAAGAACAGTATTCAACAGATATCACCTGTCCGAAAAATTGCGGTAAAATATTCTCCAAATCCGACAGTATTGATCATCATTTAAAAAGATTTTGTCCCGAAGTAAATCGCTATCGTTGTGCATATTGTAGCCGAAAGTTCGCCTCATTCAAACTAACCATTTCACACACCGAAGAAGAACATTCAAACGAACAAGTTTGTGCCATTAGTTTACACACGAAACAAAAAATTTACAAAAATTCCCTCAGCGAGAGAAAATTGGAAGGTTCGGTAATGAAGCAACAACGTAAACGAAGAAGATCCTCCACATCGTCTGAAAATCTATCCAAACGACAGAAAATCGAGGAGAACCCTAAGGAAAAAGAAAATTTGGAGAGAAAACCGAAAGAAAAGGAGAATTTGGAGAGAAAACCGAAAGAAAAGGAGAATCTGGAGAGAAAACCGAAAGAAAAGGAGAATTTGGAGAAAAAACCGAAAGAAAAGGAAATGGAAATAGGCAGTAAAACAATTCCCTGTTCGAATGGATGCGATAGATTTTTTACTCTACCGCGTTATGAGAAAATTCACTTCAAATACTGTACGCTTCCAAAGCGTTATCAATGTCCCTACTGTCCGGTTATTTACAAAATGAACTCGGATGTTACGTCACACATCGCTCGCCATCATCCGGGAATGGAAATTTATTCCATCGACACTCTGGGTGACGATCCAAACTCGAATTCTACTTTAAGTGCAATAGACGGAAATCGAAAAACAGAAAATGAAAAGCAAAAAGAAATCCCAGTCGAGCGTTACGAGAAAAGAAAACTCCACTTAAAGTGCCCCAAATGCGACACTATTTACGAACACCCAGACGATTTATGGGAGCATTTCCAAAAATGTCCAAAAAAGCAGGTACAGAACCAAGTAATTAAAAGTCCCCAAAAACCACTCAATGACATCGAGTTCGTCAACATTTCCGAACCGGAAATCCTTTCCCAAACTGCCGAATTTGTCGGCGAATCCAATGATCTCAGCTATTTGGATATTCTCGAAGGTCCGGAGGAAATGGACGAGACTTTAATCGACATCGCGAAGGACAGTGATTCAGACGAAGACTCATGCCCAAAGGAACTGTCAGAAGAGGCACTGAACGAAGAGGTTTCGAAATTTGTTCGAATGGAGGCGGAAAATCAAGCAAATCAGGGGGAGAAAACAGTGAATCAATTTGTGTGTCCCAATAAGTGTGGTTGTAAATTCACCAAACAGACGACGTTGAAAATTCATTTGAGTTTGTGTTGCCAAAAACCGATACGATTCAAGTGTCCTTATTGTGAATTCTTCACTCATGGCGAGTCGAATGGTTTTTGCCACGTTGAAAAATACCATTCGAGTGAGGAAATTTCGCTTATTGATCTGATTACGAGGAGGGAAGTTTATCCAGGGAAGAAAGTAATAACCATTGATGAGAATGACATTGAGTGTGTGGATCTGAGCAGTGAAATCGATGAAAGTGAACAAACTATGGAGACGAGTGAAGGAAATGAAATGAGTGAAGACAATGAAATTAATGAAATTAATGAACTGAATGCTATGAACGAGAGTACGACAATTTTATTCCAATGTCGTTATTGTAGTTATTCGACGAAAAAACCCGAAGAAGGATATATGCACATGAAGATGAGGCATGTCAACGAAAGCAATGCGTTAATTTGTGCCAAACCTCCAATTGATGATGAAATACAGATAATCGATTAG
- Protein Sequence
- MEDSEYFQSSSENNRIKQREKYFCSKCQKRYKSQLGFSSHLKFNCIKLEEEDDDEEEEEEEEEENVRFKHPSCIQLRKRESPKINIRPSKFLPKERPRGRRREIKSSFRKLTPNTCYSCGKQFNIEYGLARHISEGCLNSLYKCPYCNYQEDNQLLGFFHVIKKHPELKVYLINKFRGKEKTLSRKMETYLRSVPVFRRPSAQNHTDASKKPPNNCETTTDQQKNSPNISENEEQYSTDITCPKNCGKIFSKSDSIDHHLKRFCPEVNRYRCAYCSRKFASFKLTISHTEEEHSNEQVCAISLHTKQKIYKNSLSERKLEGSVMKQQRKRRRSSTSSENLSKRQKIEENPKEKENLERKPKEKENLERKPKEKENLERKPKEKENLEKKPKEKEMEIGSKTIPCSNGCDRFFTLPRYEKIHFKYCTLPKRYQCPYCPVIYKMNSDVTSHIARHHPGMEIYSIDTLGDDPNSNSTLSAIDGNRKTENEKQKEIPVERYEKRKLHLKCPKCDTIYEHPDDLWEHFQKCPKKQVQNQVIKSPQKPLNDIEFVNISEPEILSQTAEFVGESNDLSYLDILEGPEEMDETLIDIAKDSDSDEDSCPKELSEEALNEEVSKFVRMEAENQANQGEKTVNQFVCPNKCGCKFTKQTTLKIHLSLCCQKPIRFKCPYCEFFTHGESNGFCHVEKYHSSEEISLIDLITRREVYPGKKVITIDENDIECVDLSSEIDESEQTMETSEGNEMSEDNEINEINELNAMNESTTILFQCRYCSYSTKKPEEGYMHMKMRHVNESNALICAKPPIDDEIQIID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -