Basic Information

Insect: Leptopilina heterotoma
Gene Symbol: ush
Assembly: GCA_015476425.1
Location: JABAIE010000120.1:1565647-1591066[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0037 0.78 11.9 0.0 3 20 274 291 272 293 0.92

2 8 4.7e-05 0.0099 17.8 1.3 1 23 324 346 324 346 0.98

3 8 0.073 15 7.8 1.1 3 20 385 402 384 404 0.93

4 8 0.016 3.4 9.9 4.4 2 21 615 634 614 635 0.94

5 8 0.062 13 8.0 0.0 3 20 662 679 660 681 0.91

6 8 0.12 25 7.2 0.0 2 23 720 741 719 741 0.94

7 8 0.0098 2.1 10.5 1.4 1 23 747 769 747 769 0.99

8 8 0.048 10 8.4 0.5 3 21 872 890 871 891 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0037	0.78	11.9	0.0	3	20	274	291	272	293	0.92
2	8	4.7e-05	0.0099	17.8	1.3	1	23	324	346	324	346	0.98
3	8	0.073	15	7.8	1.1	3	20	385	402	384	404	0.93
4	8	0.016	3.4	9.9	4.4	2	21	615	634	614	635	0.94
5	8	0.062	13	8.0	0.0	3	20	662	679	660	681	0.91
6	8	0.12	25	7.2	0.0	2	23	720	741	719	741	0.94
7	8	0.0098	2.1	10.5	1.4	1	23	747	769	747	769	0.99
8	8	0.048	10	8.4	0.5	3	21	872	890	871	891	0.92

Sequence Information

Coding Sequence: ATGGTTGTCTCCAGTGAAATTGATTTTCATCTTCAGTGTAGTCCATCGTTTCTGAAACATCATTTTTGCATAAAGAGGGAAGATGAGGAGTGGAGTGACTCGGAGAAGACGCCGTCCGTGAGCAGCGGAGTCGAAGGAGGAGGATCGGCAGTCTCGAGTCCCTCGGCACCAGCTGTTGAGGAGGATTCGAGTTTACCACCTCCACCGAGACTCAATTCCGTTTTACCTGTGATAACTCCGAATTCCGTTACCGAGGACATCCGGTTACGATTTAGCGTACTCTCCGAAGATGCGAGGAAACGACTCTCTAGTCTCACCGAGGATATTGAGGCTTCGAGAGGATCGAGGGAGAGGCACTCGTCGACGAAGACAACGTCGTCATCGGCACATGAATCGAGTCCAAAAGCGACGCGTCTCGACATTGACGATGACACGAATATGGTTGTCAAGGACGGAGAGGATTGTGGACGAGCATCATCGTCCTCCTCCTCGTCCACCACACGGCGAAGAGAAGCCCGAAGGGATTCGGAGGATTCGCGACGATCAGATGATGCATCGTGTGACACGAAGAAAGCACGTTTAGACGACGATGTCACGCCAAGATTGAGACTGAATACTAGTCTGGCAACGGATCCTGCTCTCCGGCCAGCCACCGTTGCCGCTCTCACCATCAAACCTGAGAATGTCTCGCCTCCAAACCAAACGCCACCGCTGCCCGTTGGACTCCAAAATGCGATTGCCTCCGGTCGTCTTTACGTGTTGCCAACGGACGGGAAGGAGACTATAACTCTTGAGCCGGCAAGACCAGCGCCGTTGATTTGTCCTCCATGTGGAATTAGGTTTAGTTCAGCGAGCACTTTGGAAGCACATCAGACATTCTATTGCGCTCATCGGCCACGTCTAGAGGAGGACTCGGCGAATAATGACGAGGACGATGAGAAAAGTGGCAAATTCGACGTACGCAAGGCCTACGCGTGTCCACATTGTTCGTACAGTGCTGACAAGAAAGTCTCTCTCAATCGGCACATGAGGATGCACGCCGCTTCACCCGTGACACCTTCTGTACCACCAGCACCAACAACTCCCGTGGGGAATTCCGCGTCCGTCACTCCCGTTTCCAATGGAACCCTCAACGAGGAGGCCGAGAGATACTGCCGCAATTGTGACATCAGGTTCAGTTCGTTGAAGACGTACCGCGCGCACAAGGCGCATTACTGTAATACAAGACACGTGGTAAAGGATGCACAACCAGCGCCAGCATCGGTGAAAGCATCTCCGCCAACGAGTTCGAGTCCTGGTGATTCGCCCCCGCCTCAGCCGTGTCTGGCCCTACCGACAAATCCAATCCTCATTGTTCCTTATTCATTGTTTCGTGGTGCGAGTGTTCTGGCGGCTCCCGCTCTTCCTGCTCCCGATACCGCGTGCTTCCTATTGCCAAATGGATCATTACAGCCAATGACGAGGGGTATTTCCACGACACAAAATACCGTGACCGAGGCACCATCCGTTCTTCGCGCCGCGAATAAACCATCGACACCGTCATCAATTGGTTCAACATCAACGTCACCCACTGCGCCCGCCTCGGCACCACTCGATCTCAGTATCAGACGTTCGCCTGTTCATCAGGACGAGAAGGAGAATAGAGTTTCTCCAGCGCCAACGTCATTGCCACCGCCACCGGGCAGTCCGAGATCAAGGGGCAGCAGCAGTCCACGTTCAAGAACAATTTCGAGCAACACAACAAATGCTGTTGTTTCGAATCCAACAACTGAACTTGCACTTAGATTGACTGATTTGCCACCGCCTCAGGCTCCTGGAGTTCTTGTTAAACAAGGTGTCTCCCGGTGTAAGGAGTGCAACATTGTGTTTTGCCGACATGAAAATTTTGTGGCCCACAAAAAACATTACTGTCAAGCAAGGGAAAGTACAATAAGTAGTCCACCACCCCCGGGAACGCCTTCACCTCCTCTTGTTCAGCTTATATGCGCCGCTTGTGGTATTAAATTTGCTTCGATGGACAATCTCGCTGCTCATCAAGCATTCTACTGTCCAAAGAGGCCAGAATCTCAGGAACATCATACTCGATGTCACAAATGCAAGGCAATAATCGAATCAGGAAGTACTCATACGTGTACCAGCAGTTCGACAGGTGGATGGCGATGTCCAGTTTGCGGTGCAGTGAGTCCAACGGCTTTGGCCGCTCAGCGACATATGGATGCTCATCAAGGTGTTAAAGCTTTTAGGTGTACAATTTGTCGATATAAAGGAAATACCCTTCGTGGCATGAGAACACATATCAGAATGCACTTTGAAAAACGTGGCACAGATCTGCAGGAGGAAAATTACATAACATGCGTCCTGGATGATGATACAACAACAACACCAACACCAGAACCACCACCGGCCGTAACACCCGATGAAATTCCCGCTGAAACACAAATGAATGGAAAAGCGGAAGTGAGAAAAAGTAGTCCACAGCCTGCTGTAACAAATAATCCACCACAGCCACCAGCATCACAAACGTTGACAGTCGCCGGAAAAGTGAAACAAGAACGAGAAGACACACCACCACCTGAGGAAAGTCTAGATCCAAATAAAACTGGACCACGATATTGTCGATCCTGTGACATTAGCTTTACCTATCTGAGCACATTCATCGCTCATAAAAAATTCTATTGCTCCAGCCACACCGGTGAAGCTAGTAACAATAACAATAATAACAATAATAATTCCAGTAGCCATACATCTACGCCACCAACTGGAAGGGCAGAGGCTCCTGTACTATAA
Protein Sequence: MVVSSEIDFHLQCSPSFLKHHFCIKREDEEWSDSEKTPSVSSGVEGGGSAVSSPSAPAVEEDSSLPPPPRLNSVLPVITPNSVTEDIRLRFSVLSEDARKRLSSLTEDIEASRGSRERHSSTKTTSSSAHESSPKATRLDIDDDTNMVVKDGEDCGRASSSSSSSTTRRREARRDSEDSRRSDDASCDTKKARLDDDVTPRLRLNTSLATDPALRPATVAALTIKPENVSPPNQTPPLPVGLQNAIASGRLYVLPTDGKETITLEPARPAPLICPPCGIRFSSASTLEAHQTFYCAHRPRLEEDSANNDEDDEKSGKFDVRKAYACPHCSYSADKKVSLNRHMRMHAASPVTPSVPPAPTTPVGNSASVTPVSNGTLNEEAERYCRNCDIRFSSLKTYRAHKAHYCNTRHVVKDAQPAPASVKASPPTSSSPGDSPPPQPCLALPTNPILIVPYSLFRGASVLAAPALPAPDTACFLLPNGSLQPMTRGISTTQNTVTEAPSVLRAANKPSTPSSIGSTSTSPTAPASAPLDLSIRRSPVHQDEKENRVSPAPTSLPPPPGSPRSRGSSSPRSRTISSNTTNAVVSNPTTELALRLTDLPPPQAPGVLVKQGVSRCKECNIVFCRHENFVAHKKHYCQARESTISSPPPPGTPSPPLVQLICAACGIKFASMDNLAAHQAFYCPKRPESQEHHTRCHKCKAIIESGSTHTCTSSSTGGWRCPVCGAVSPTALAAQRHMDAHQGVKAFRCTICRYKGNTLRGMRTHIRMHFEKRGTDLQEENYITCVLDDDTTTTPTPEPPPAVTPDEIPAETQMNGKAEVRKSSPQPAVTNNPPQPPASQTLTVAGKVKQEREDTPPPEESLDPNKTGPRYCRSCDISFTYLSTFIAHKKFYCSSHTGEASNNNNNNNNNSSSHTSTPPTGRAEAPVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01391534;
90% Identity: iTF_00880781;
80% Identity: -