Lhet055664.1
Basic Information
- Insect
- Leptopilina heterotoma
- Gene Symbol
- -
- Assembly
- GCA_015476425.1
- Location
- JABAIE010000067.1:2807773-2813388[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00099 0.21 13.7 0.2 1 23 22 44 22 44 0.97 2 14 9.8 2.1e+03 1.1 0.6 2 23 51 76 50 76 0.72 3 14 5.7e-06 0.0012 20.7 1.3 1 23 82 105 82 105 0.98 4 14 5.2e-05 0.011 17.7 2.0 1 23 111 133 111 133 0.96 5 14 3.9e-06 0.00082 21.2 2.0 2 23 140 161 139 161 0.97 6 14 2.8e-07 5.8e-05 24.9 0.5 1 23 167 189 167 189 0.98 7 14 0.00028 0.06 15.4 1.4 1 23 237 259 237 259 0.96 8 14 0.035 7.3 8.8 3.6 1 20 266 285 266 287 0.92 9 14 0.00057 0.12 14.4 3.6 1 23 681 703 681 703 0.96 10 14 0.0056 1.2 11.3 2.0 1 23 710 733 710 733 0.92 11 14 9.4e-06 0.002 20.0 0.2 1 23 741 764 741 764 0.98 12 14 1.3e-05 0.0028 19.6 4.0 1 23 770 792 770 792 0.98 13 14 0.00076 0.16 14.0 5.9 1 23 798 820 798 820 0.99 14 14 1.6e-05 0.0033 19.3 2.8 1 23 826 848 826 848 0.97
Sequence Information
- Coding Sequence
- ATGGAAGTTGTTGATACTCGCAAAACAACCGCAAACAAAACGCAACAAGGTAATTTAAAGTTGTTTGCCTGTCCTATATGTGTCGAACGTTTTACAAGCGAAAAACAATATTATGGTCACCTGAGGATTCATACGGAGGAAGTTTTATTGTCTTGTGATCAATGTCCAGAATCTTCAATTAAATTTGATTCTCTGGGTAAATTGCAAATGCACGAAAATTTATGTCATAATATTGTCAGACCTTTTAAATGTCATGAATGTGGATTATTGTTCGATCGAGCCTCTCAATTAGAATATCATCAACGAAGTGTTCATCTTGGTGAAAAATCTCATATATGTCAAATATGCGAGAAAGGATTTTTTCGTAAGACTGATTTACGAACTCATTTAAATATACACCTTGGTACGAATGTTAGTATGTGTGAAATTTGCGGAAGAAAATTTAACCATGTGTCGAATTTAATTAGACACAGCAGGACTCATGCTGGCATTAAACCATATCCTTGCACTGTTTGTGGTAAGCGATTCACTCAAATAAGTTCTTTGGCGAGACACAAAAGAATTCATGAACGTGTACCAAAAGGAAAAAGTGTTAATTCACAAAAAGTTATTAACAGCAATGATTATAATATAAATCATCACGAAGTCGAAGTAAACGAGATTACTAAAGACGTTGGAACTAGCGAACGAAAAGTGATAAAACGTCGTCACTATTGTAAAATTTGCGGAGAAAGTTTTCAGTTTGCGGTTCTTTTGAGAAAACACGAGAAGGAACATCTCAATAGCGCCAATATTTTTGAATGCAAAAATTGTCACAAGAAATTTCAAAATCCGGAGGACATCAAAGAGCATAGTTGTAGACAGGAGGCTTTTACTTGGACACCTGAGGACAATACTTCTACATCTGCGAATATATCGAAAAAAATTATTTTTGAAGAAAAAAATGATTCTCAATACATTGATAATGTAGATATCCAGTGTCATTCAATATTCTCCAAAGATTTAATACCGGAAGTTAACGCAAATGAACAGAATGCAGAAACTGTTCTTTATTTTAAAGCAAAACAAATGACAAATATTAATCTGGATGAATTTGAAGAAGCATCTTCTCACTTCTTTAGAGATAATGTCATGGAGTTGGCTAATATTTCCGATTTACTTGGTATTTGCAACAATGAAAATGACGATTTAGAAAAGGATGTCGATACTCTAAACACTTACACCGGGGTAAATGATATATTACCCGATGTTCCGAGACTTTTAGAAACTGAAATTTCACCGGAAGATCAAATTGACATGAGAAATTATGTCTCAAGAAAGCAATTATCCAAAGAAAATATAAAATATAGACAAATTGAGGAAAATAAATTTACCTTTAAGCCCGACAATAATTTCAAAGATAATTTATTAGAATTTGAGGAAAATAATACAATTCAATATTTTTTAAATACAGAATCACAAGATTCGACCACTGATCTTGAATTGGAGTCCGTTGATCCTAAGGAAATTCTAACAGAAAATGAACCAACACTTCGTCTCGTGCAAATTGAAACTGGGGAACAATTCTATGAATTGGTAATGGATAATATCACCGATAAGACACAATTCCAAGATCTCGGGACATTGGAAAATGTTGAAGAGACAACGGCAAACGAGTCTGTGGAAAATTTACAAAATTTCGAATTTTTCCGAACAGAAACACAAACAAATTTTGAAGTTTACACCGAGGGGGGTGTATTCGAGGATTTTGAGAGAAGAAATTACGAAACGTGCGCCAAAGAATTCTTGGAATTAGTACAACCCGACAAGCAAAAGGAAGGAGAAATATGTCACGCTGAGAATGGTGATCAATTTTTGGAATTAATCGAGGATCAACATTTTTCGGAAATTAAAGATAAAGTCACTGACACTTTAAGAGAAGTGTCGACTTCATCTTCATTTGTCGAAGAATTTGAGAATTACCCAATTTCTCAAGCAACAGTTTCAGAGATAAAAACTACAAATAAAAATGACAGCTCACCGAAGGAAAAAAATAAAGAATTTCATTGTTATGTGTGTCAAAAAACTTTATCTTCTAAATACAATTTTACACAGCACATGGGAATTCATTACGTAAATCATCAACGTTTTCACTGCAAAGAATGTGACATATCCTTCGCATGGAAATCAACTTTAAATAAACACAATGAAAGTACTCATAGACCAGAAGGACGTCAATCATATGTCTGTAATATATGTCCAAAAGTTTATAACAATCTTTCACAAGTTAATGAACACATCAAACGAGATCATTTGAAGGAAAGGAAACACGTTTGTCCTCTATGTGGAAAATCATTTTTTAAGAAGTTTGATTTGAAATCACACTTCCGAACGCATACTAATGAAAAACCCTATCAATGTTCATTTTGTGAGAAGAGATTTCATTATCAGAGTCATGTTATACGTCATGAGCGTATTCACTCGGGAGAAAAGCCTTATATTTGCGACGTATGCCAAAGAAGTTTTTGTCAACGTAGTTCATTGAAAGCCCATAAAGCAAAACATCGTCTCAATAAACAAGATGCGAAGAAACAACAAAAAGACAAAAACGAACTAGAATAA
- Protein Sequence
- MEVVDTRKTTANKTQQGNLKLFACPICVERFTSEKQYYGHLRIHTEEVLLSCDQCPESSIKFDSLGKLQMHENLCHNIVRPFKCHECGLLFDRASQLEYHQRSVHLGEKSHICQICEKGFFRKTDLRTHLNIHLGTNVSMCEICGRKFNHVSNLIRHSRTHAGIKPYPCTVCGKRFTQISSLARHKRIHERVPKGKSVNSQKVINSNDYNINHHEVEVNEITKDVGTSERKVIKRRHYCKICGESFQFAVLLRKHEKEHLNSANIFECKNCHKKFQNPEDIKEHSCRQEAFTWTPEDNTSTSANISKKIIFEEKNDSQYIDNVDIQCHSIFSKDLIPEVNANEQNAETVLYFKAKQMTNINLDEFEEASSHFFRDNVMELANISDLLGICNNENDDLEKDVDTLNTYTGVNDILPDVPRLLETEISPEDQIDMRNYVSRKQLSKENIKYRQIEENKFTFKPDNNFKDNLLEFEENNTIQYFLNTESQDSTTDLELESVDPKEILTENEPTLRLVQIETGEQFYELVMDNITDKTQFQDLGTLENVEETTANESVENLQNFEFFRTETQTNFEVYTEGGVFEDFERRNYETCAKEFLELVQPDKQKEGEICHAENGDQFLELIEDQHFSEIKDKVTDTLREVSTSSSFVEEFENYPISQATVSEIKTTNKNDSSPKEKNKEFHCYVCQKTLSSKYNFTQHMGIHYVNHQRFHCKECDISFAWKSTLNKHNESTHRPEGRQSYVCNICPKVYNNLSQVNEHIKRDHLKERKHVCPLCGKSFFKKFDLKSHFRTHTNEKPYQCSFCEKRFHYQSHVIRHERIHSGEKPYICDVCQRSFCQRSSLKAHKAKHRLNKQDAKKQQKDKNELE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00879920;
- 90% Identity
- iTF_00881466;
- 80% Identity
- -