Lhet046689.1
Basic Information
- Insect
- Leptopilina heterotoma
- Gene Symbol
- -
- Assembly
- GCA_015476425.1
- Location
- JABAIE010000261.1:143654-145996[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.00029 0.39 12.1 0.0 3 36 15 48 13 51 0.90 2 2 6.8e-09 9.2e-06 26.9 0.0 5 42 66 103 65 105 0.95
Sequence Information
- Coding Sequence
- ATGGTAAGACATTGGAAAAGAAAAAATCCTCCAATTAACAAAGAAGATTTGGAAAAAGCAATTAAGGAAGTATCAAAAGGTAAAACAATAAAAGAAACAGCAAAAGAATTTGGTTTATGCTATGGGACTTTACGTTTTCATTGCATCAATATTCCAACTTGTGTAAGCAAACGACCAAGAGTTTTATCACCAGTTCTGCAAGAAGCATTGTCTGAGATAAAGGAAGGAATGAGTATAAATAAAGCGTCGAAAAATTTTGAATTAAACTACGAAACACTGCGTATTGCAGCGAAAAAAGAAAATGTTGAAATAAATAAATTTAGACAGCCGGAATTTTTGCGTAATGCACCGAATGGTTCTCGCTCAGCTGCAAATGGTTCTGGATGGATGACAAAATCCACATTTCTCGATTTTTTGAATCATTTCCAGAAAACTGCTCATTCATCTCCGCAGAACCCAACTCTGTTATTGTTCGACAATCACGAATCGCACATTTCAAGCGAAGCGATGCAGTTTTGCATCGACAATGGGATTCATGTAGTGTCATTTCCACCACATTGCACGCACAAGATGCAACCACTAGATCGCAGTGTTTTTGGACCATTTAAAAAGGCCATTACTGTAGCTTGCGATGATTGGATGCGACGCTATGTTACAAACATTACCATCCACAACTTAGCAGAAATTATAAAAGAACCATTTATTCGAGCATTCACACATTCAAATATCGAAGAAGGGTTTCGCTGCACCGGTATCTATCCGCCAAATTCAAACATTTTCTTTGATAGCGATTTTGCACCATCTAGTGTCACTGACCGACCACTAATAAATGTGACTGACATTGCAGCAGAATGTGATATTGAAGACGATTTGCAAGAAAGAGAAATAGATGGAGCGAATTTAATCGAATTAGACTCTCTAAATTTGGACGAAACTATTCAAAACATCATGCCGTTTCCGAAAGCACCAGCTCGAAAAGAAACTGCACGTGGTCGCAGACGTGGTAGAACCCAAATATTAACCAGCCCCGAAGTTATGGGAGAAATTCGAAGAAAAGAAGCGGAAATTATAGCGAAAAAACGTGAAATTGGACGAGGACGACCTCGTGGGCGACCTCGTGGAAGTGGGCGAAATATAAATTCAACTGCTGGCTGCAATTCAAATATAAGCCCTGAAATTGTAGAAGTAATTCTAAACGAAGAAGTGGAAATTACGGCGCAAAATCGTGGAACTGGACGAGGACGACCTAGTGGACGACCTTGTGGGCGACCTCGTGGAAGTGGGCGAAATATAAATTCAACTGCTGGCTGCAATTCAAATATCAACCCTGAAATTGTAGAAGTAATTCTAAACGAAGAAGTGGAAATTACGGCGCAAAATCGTGGAACTGGACGAGGACGACCTAGTGGACGACCTCGTGGACGACCTCGTGGAAGTATGCGAAATATTAGCCCAATTGCTGGGCCCAGTTCAAATATCAGCTGCGAAATTGGACGGGGACGACCTCGTGGTCGACCACGTGGAAGTGGACGTTCAAAAAAAATACCTTCATCTTCTGAGAGTGATTTGGATTTGAGTATGGAGGATAAGTGCTGCCTGTGCAATAAATCCATTTCTTTAGGACTTTCCTATCAAACATGCGTATCGTGTTTGGAAAAGGCACACGTTACATGTTCAAGAATTGAGTTAAACTGGGCTTGCGTCAATTGTGTCTTAAGCGACGAAGAAATGGACATATAA
- Protein Sequence
- MVRHWKRKNPPINKEDLEKAIKEVSKGKTIKETAKEFGLCYGTLRFHCINIPTCVSKRPRVLSPVLQEALSEIKEGMSINKASKNFELNYETLRIAAKKENVEINKFRQPEFLRNAPNGSRSAANGSGWMTKSTFLDFLNHFQKTAHSSPQNPTLLLFDNHESHISSEAMQFCIDNGIHVVSFPPHCTHKMQPLDRSVFGPFKKAITVACDDWMRRYVTNITIHNLAEIIKEPFIRAFTHSNIEEGFRCTGIYPPNSNIFFDSDFAPSSVTDRPLINVTDIAAECDIEDDLQEREIDGANLIELDSLNLDETIQNIMPFPKAPARKETARGRRRGRTQILTSPEVMGEIRRKEAEIIAKKREIGRGRPRGRPRGSGRNINSTAGCNSNISPEIVEVILNEEVEITAQNRGTGRGRPSGRPCGRPRGSGRNINSTAGCNSNINPEIVEVILNEEVEITAQNRGTGRGRPSGRPRGRPRGSMRNISPIAGPSSNISCEIGRGRPRGRPRGSGRSKKIPSSSESDLDLSMEDKCCLCNKSISLGLSYQTCVSCLEKAHVTCSRIELNWACVNCVLSDEEMDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00881921;
- 90% Identity
- iTF_00881921;
- 80% Identity
- -