Basic Information

Insect: Leptopilina heterotoma
Gene Symbol: -
Assembly: GCA_015476425.1
Location: JABAIE010000141.1:918797-922318[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 2.2e-06 0.003 18.8 0.1 2 42 198 238 197 241 0.87

2 5 5.2e-09 7.1e-06 27.2 0.0 5 42 251 288 248 291 0.86

3 5 0.0031 4.3 8.7 0.0 19 33 316 330 303 335 0.77

4 5 8.1 1.1e+04 -2.2 0.0 31 45 345 360 345 360 0.85

5 5 1.1e-11 1.5e-08 35.8 0.0 5 42 363 400 362 403 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	2.2e-06	0.003	18.8	0.1	2	42	198	238	197	241	0.87
2	5	5.2e-09	7.1e-06	27.2	0.0	5	42	251	288	248	291	0.86
3	5	0.0031	4.3	8.7	0.0	19	33	316	330	303	335	0.77
4	5	8.1	1.1e+04	-2.2	0.0	31	45	345	360	345	360	0.85
5	5	1.1e-11	1.5e-08	35.8	0.0	5	42	363	400	362	403	0.93

Sequence Information

Coding Sequence: ATGTCAGAGGTCAACAATCAAATTCAAGTTGTTGAAAGAACTTGTCTACAATGGGAAGATTATCAAAATCAATTCTCAGGTGTTGTTCGACAACTTCTAGACGAAAATTGCATGGTGGATGTTACACTATGTGTATCGGGACAACGCATTCTTGCTCATCGCATCGTTCTTTGTGCTTTCAGCACTTTCTTCAAAGATTTGTTGAGTCAGGTGACTGACGATCATCCAGTTATTATTTTAACCGGCGTGTCTCCTGAATGTGTCAAAGGAATTATTGAGTTTATTTATCAAGGAGAAGCCTATTTTCCCGCAGATAGTATAAAAAATATTTTGGATACTGCATTTTATCTTAAAATTGCTGGATTAATGGAGTACAAAATCAGTGAAACAGTTTCGAAATTGAAGGAAGATGCGGAAGAAATTGAAATATCGGATACAAATTTGAATGAAATGGAGGAGGAGGAAGAAGTTTTGGATGTTTTCGAGCATGTTTATGAAGAGACGAATGATCAATCGGAACAGAGTGCAACTGAGGAAAATTCTGATAGTAAAAAAAGAAAAAGACGTTATTCAATGAAACGGGAATACAGTGAAGATATGCTTGCTGCGGCTATTAATAATTTACGTGAGGGACAAACATTAATTGAAGCTGCTACTAAAAATCATATTCCTCGTTCTACATTGTATATGCGAGCAAAAGCCTTAGGAATTCAATTGCAGGCTTGCAGAAATGAATATCCTGCCGAGTGTATGAAAGGAGCAATTGACGCCGTCATCGGAGGATCGAGTTTGCAGACTGCTTCGGAAATGTTCGGTATTCCAAAAACAGTTCTTTGGCGACGAATGCAAAAGGAGGGTTATCAAGTTTTTCGACCAGAACTGAAGAGGAGTTATGGTTCGGATAAAAGGGAAGCGGCAGTAAAAGCATTAGAAAGAGGGGAAAATCTATCGAAAGTGGCGCAAGAATATCAAATACCAAAGACAACGTTGTTCAGGGACAAGACAAAATTAATTGATCAAGGTAAGTTACCAACGTCGTTTTGGAAGAAGAGAAAAACAGAAAACGAAGCTGTTAAACAATTTCGACTCGAGGAAGCAGTAGCTGCGTGCAAAAGTGGAAAAATGTCACAAGCCGCCGCATCAGTTTGTTATCGAATTCCAAAAACAACGATATGGAGGCGATTGCAGCAGGACAATTCGAAAAATAAGAGGAAAACTAAATCAACTGGTGCAATTAATGCAACCGCTAACACTATTGACGCTAATGAATTCACATTTTGTGAAGTTACATCAGGAATTCCAATCACTTATATAGACGAGAATAGTATTCCCGAAGATTCCGTCATAATTCTCACAACAGAAGATGTCGACGAATTGAGTTTGGAAAATCGAGCCCAAATTATTGTCAATTCGAATGTCAATGAAGAATTCATTTCCAATTCGGAAGCGGAGCCCACCTACACTGTTTCGAAGAGTTAG
Protein Sequence: MSEVNNQIQVVERTCLQWEDYQNQFSGVVRQLLDENCMVDVTLCVSGQRILAHRIVLCAFSTFFKDLLSQVTDDHPVIILTGVSPECVKGIIEFIYQGEAYFPADSIKNILDTAFYLKIAGLMEYKISETVSKLKEDAEEIEISDTNLNEMEEEEEVLDVFEHVYEETNDQSEQSATEENSDSKKRKRRYSMKREYSEDMLAAAINNLREGQTLIEAATKNHIPRSTLYMRAKALGIQLQACRNEYPAECMKGAIDAVIGGSSLQTASEMFGIPKTVLWRRMQKEGYQVFRPELKRSYGSDKREAAVKALERGENLSKVAQEYQIPKTTLFRDKTKLIDQGKLPTSFWKKRKTENEAVKQFRLEEAVAACKSGKMSQAAASVCYRIPKTTIWRRLQQDNSKNKRKTKSTGAINATANTIDANEFTFCEVTSGIPITYIDENSIPEDSVIILTTEDVDELSLENRAQIIVNSNVNEEFISNSEAEPTYTVSKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00879877;
90% Identity: iTF_00882861;
80% Identity: iTF_00882322;