Ldro005319.1
Basic Information
- Insect
- Leptopilina drosophilae
- Gene Symbol
- -
- Assembly
- GCA_032873175.1
- Location
- CM065478.1:76705375-76747402[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.29 58 5.7 1.3 1 20 155 174 155 176 0.89 2 13 0.025 5 9.1 4.2 1 17 192 208 192 212 0.91 3 13 1 2.1e+02 4.0 1.2 2 21 254 273 253 277 0.86 4 13 0.00022 0.044 15.6 3.1 1 20 290 309 290 311 0.95 5 13 8.9 1.8e+03 1.0 0.9 1 21 388 408 388 409 0.87 6 13 0.027 5.5 8.9 4.5 1 20 425 444 425 446 0.94 7 13 0.21 43 6.1 1.2 1 21 481 501 481 502 0.92 8 13 0.23 47 6.0 6.0 1 20 518 537 518 539 0.94 9 13 0.045 9.2 8.2 2.3 1 21 545 565 545 566 0.95 10 13 0.93 1.9e+02 4.1 0.9 2 19 623 640 623 643 0.92 11 13 0.00063 0.13 14.1 3.5 1 20 659 678 659 680 0.95 12 13 2.5e-06 0.00052 21.6 2.3 2 23 686 708 685 708 0.97 13 13 0.0014 0.29 13.0 0.4 1 20 810 829 810 831 0.95
Sequence Information
- Coding Sequence
- ATGGAAACGATTCCACTTCCATTTCAAAATGGAAGCCTTCCACGCAAACTGGAAAAATCAATGTGGTACACTTCGCCACATGCGCGAAACACCGGCATCGATTTACCAGATAAGAACACCATCGCGCATGTTAGGACGAATCCTTGGGGGAAGAACTGCGCATCCGGACTCTCAGCGCTCACTATATCCTCTTTCGTTGAGTTCTTTTTACACAATGGCGCGATGGGAGAACGCTTTAACGATCGTTGCGGGTCCCACATCCCTTCGTGCAGGGAACACGAAACGACAAGTTCAAGAGGGGGAGACGCGGCGCACCAACCAAATTTCATCCAACTGCGCAGAAAAGATGTGCCTAATGGGAATTTGAGGGGAAGTATTGAATCATTTCAAGGACAGCATTACTCGATTCTCTCCGTTAAAAGTATGGAGCAATTAACACCGCCACAAACTCAAGGGGACGGCTTTTTTTGTCGCTTTTGCGGGAAAAATTTCGGTAGAATAAGTGGAAGGACACATCATGAGAATTTGTGTACACGTAATCCGGCGAGCAGTCAACCAAAGGAATTATTTGCGTTTAGTTGCGACGATTGTGGCTGTAGTTTTAAACATAAATGGGAATTGAATTGTCATGAGGCCTATGATTGTGGCGTGACACACAGATGCGAAATGTATCAGgagcaaaaatttttgtcagttagAAATTTCGATTTTCTAACGCCAACTGAAGAGTACGATGACAACATGGAAATGTACACGTGGAAATGTCAATATTGTGGAATGAGTTTGGGAACAATAAGTGGAAAGACGAGACATGAAAATAACTGCTCACATAATCCGTCAATAAGTAAAGAGAAGAGGAGTTGGATGTTTAGTTGCAACAAATGTGGTCATAATTTTAGTCGCAAACATTATTTGTCTAGTCATATTGCTTACGATTGTGGTAGAACGCACAAATACGAAGGATTAATAACGACAAGAATTCCGCAGCTCAATGTTCGAAGAATTGAACAACTAAAATCATGGGACGATGGACACAAGAGTGGTGACTTCTATTTATGCCGCTATTATGAGAGGTTAATGAACGCAGAATTGCCGATTCTAAAAGTAAGGAGACTCGAAGAGCTAGTTCCTGCAGGAGAAGACAATGTGAAAGTGAACATTTATTTATGCCGATTTTGTAAGCAAAATTTTGGACGTGGAAGCACTAAGAAAGTTCACGAAAATACGTGCAGTTTTAATCGTGAAATTAAAAAGAGCATGTTACGCCTGagattttgttgtaaaaattgtgGTAGCAATTTCAATCGAAAGAAGCATTTAGTTGAACACACGACTAATGATTGCGatGAAAAGGTGGACACAAAACTAATGCCGCTGCTAAAAGTTAAAAGAATTGAACAGCTACAAGGAGCCGAAGATTTGAAGGAATGTTTAGACGTCTATTTATGCCGTTTTTGTAGTCAGAAGTTTGGTAAACAAAGTAGACTGAAAATTCACGAGAGAAATTGCAGTCGAAATCGAAAAACAGACCGAAGTCGACTGCGTAATAGATTTTGTTGTAACAATTGTGGCAGTAATTTCAAACACGACAGAAGTTTGAAGAGACATAAATTTAATGATTGCGGCATAACGCACAAGTGCGAGAATTGTAATAGATATTTTGGCACAATATTTGGTTTGAATAATCACATTTGTAGTGACGAAACGTGGATTATGGACCAAGTGCCACATCTTGCAGTGAGAAGAATTGAACAAATGCTTCCAAGGAGAAGACGAAGAGTTAATGACAGTGACTTTATGGAATCGCCGGTTTTATTTGTTAGGAATCTTGATATGCTGATTAGACCACAGGCAGCCATTGTTGAGGAGTGTAAATTTTGTAGAAGGAATTTTGGAACATTGAGTGGAAAAACGCGTCACGAAGACAAATGTCTGCAGAATCCAgcaattaataaagaattgagGCGTTTGAGGTTTAGTTGTCACAAATGTGGATTTAATTTTAGCTCGAAAGGCAGTTTTAATAAGCATAAAGCCTATTGTGGTGTGTCGCAGAAGTGTAAAATATGCAACAAGATGTATTCGTCGAGGAATAATTTAGAGAGACACTTTCGTACAGTACATTgTGAATTGTATCAAGGGGAGAATTTTCCGACTTTGTTCATTCGAAGTATTGAGTCACTATCGGCACGAAAAAAAGAGGAAGCCGATTACGAGGAGGAGGAAGAGGAGGAAGTGGAGAAAAAATTGACATGTAAAGCAAATAAATTGACGCCCTTAATAGGAATTCGAAAGCTGGGTGTTGAGAAGAATGCTTATTCGTATCACAGTGCCGAAGAGGGgacaaataaaacttattatgaaaatgtgagaaattttcgaaaatcgaAAAATGATGATAGAAATTATAATACGAATCATTTGCTGTTTAGTTGCGAAGTTTGTGGTTATAGTTCTTCGGATAAATACACCATGAATAGACATAAAGCTTATGACTGTGGCGTCACGCACAATTACGGCCCTGGCATCGTTCGCCGGTATAATACTGTCAGTGCGGGTGGTAGAAGGGGTTTCTCTCTCTCGGTGAGAGTCGGGGTGGGGGCAGCGCAGTTGGCGGCGCGGGAGAAGTGGAAAACCGGGAAAGAGAGAGAGCAAGTCAACGAAGGAAGAATCCACAACAAAATCGCTTTGCACCACCGAAGCACCGCCATCACGTTGTGCCCCCTAGTGACTTTTTCCGCTACGCCACTACTGTGTGCTGTTTTCTTCGAGCAAACGGTGAGTGACAGCTGCCAAACTTCATTTCAACGTACAATACATGCCACGACATTCGGAGTGTCAGTACGCGAGTGTTTCATTTCCGCTGCAATACGTCGAAAAAACTTGACAGTGTCGTGTGCTTTCTTTTCCATGAACCTTGGCACTGTCTTTTAA
- Protein Sequence
- METIPLPFQNGSLPRKLEKSMWYTSPHARNTGIDLPDKNTIAHVRTNPWGKNCASGLSALTISSFVEFFLHNGAMGERFNDRCGSHIPSCREHETTSSRGGDAAHQPNFIQLRRKDVPNGNLRGSIESFQGQHYSILSVKSMEQLTPPQTQGDGFFCRFCGKNFGRISGRTHHENLCTRNPASSQPKELFAFSCDDCGCSFKHKWELNCHEAYDCGVTHRCEMYQEQKFLSVRNFDFLTPTEEYDDNMEMYTWKCQYCGMSLGTISGKTRHENNCSHNPSISKEKRSWMFSCNKCGHNFSRKHYLSSHIAYDCGRTHKYEGLITTRIPQLNVRRIEQLKSWDDGHKSGDFYLCRYYERLMNAELPILKVRRLEELVPAGEDNVKVNIYLCRFCKQNFGRGSTKKVHENTCSFNREIKKSMLRLRFCCKNCGSNFNRKKHLVEHTTNDCDEKVDTKLMPLLKVKRIEQLQGAEDLKECLDVYLCRFCSQKFGKQSRLKIHERNCSRNRKTDRSRLRNRFCCNNCGSNFKHDRSLKRHKFNDCGITHKCENCNRYFGTIFGLNNHICSDETWIMDQVPHLAVRRIEQMLPRRRRRVNDSDFMESPVLFVRNLDMLIRPQAAIVEECKFCRRNFGTLSGKTRHEDKCLQNPAINKELRRLRFSCHKCGFNFSSKGSFNKHKAYCGVSQKCKICNKMYSSRNNLERHFRTVHCELYQGENFPTLFIRSIESLSARKKEEADYEEEEEEEVEKKLTCKANKLTPLIGIRKLGVEKNAYSYHSAEEGTNKTYYENVRNFRKSKNDDRNYNTNHLLFSCEVCGYSSSDKYTMNRHKAYDCGVTHNYGPGIVRRYNTVSAGGRRGFSLSVRVGVGAAQLAAREKWKTGKEREQVNEGRIHNKIALHHRSTAITLCPLVTFSATPLLCAVFFEQTVSDSCQTSFQRTIHATTFGVSVRECFISAAIRRKNLTVSCAFFSMNLGTVF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -