Ldro005344.1
Basic Information
- Insect
- Leptopilina drosophilae
- Gene Symbol
- -
- Assembly
- GCA_032873175.1
- Location
- CM065478.1:76916495-76952238[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.012 2.5 10.1 0.2 2 21 6 25 5 26 0.94 2 19 0.009 1.8 10.5 0.3 2 22 45 65 44 65 0.94 3 19 0.00061 0.12 14.1 6.7 1 23 73 96 73 96 0.96 4 19 1.3 2.7e+02 3.6 0.2 1 10 153 162 153 167 0.88 5 19 0.0015 0.31 12.9 0.5 1 21 207 227 207 228 0.95 6 19 0.0034 0.7 11.8 2.3 1 23 236 259 236 259 0.98 7 19 0.00042 0.085 14.6 1.4 1 20 298 317 298 319 0.95 8 19 0.0072 1.5 10.8 1.1 1 21 344 364 344 365 0.95 9 19 0.11 23 7.0 0.3 1 21 450 470 450 471 0.93 10 19 0.47 96 5.0 1.2 1 20 504 523 504 525 0.94 11 19 0.24 49 6.0 0.3 1 21 630 650 630 651 0.94 12 19 0.0062 1.3 11.0 0.9 1 21 676 696 676 697 0.95 13 19 1.1 2.2e+02 3.9 0.4 1 21 744 764 744 765 0.93 14 19 9.3e-05 0.019 16.7 1.3 1 21 773 793 773 794 0.95 15 19 0.0018 0.37 12.7 1.1 3 20 909 926 908 928 0.94 16 19 0.075 15 7.6 0.1 1 17 1002 1018 1002 1019 0.92 17 19 0.082 17 7.4 2.7 1 21 1282 1302 1282 1303 0.94 18 19 0.00023 0.047 15.5 1.0 1 20 1332 1351 1332 1353 0.95 19 19 0.08 16 7.5 3.5 1 23 1361 1384 1361 1384 0.98
Sequence Information
- Coding Sequence
- ATGAGGAAGCTGTGGGTCTGTTTTCAATGTGGTAAGAGATATTCGTGGCGAGGATCACTTCAAAATCACCGTCGCGTTGAGTGCCAAAAAGAACCAACATTCTGTTGTCCCGTGTctgGCGAAGGAGCGTGGACCTGTTTCCAGTGCGGAAGAAATTATCGATGGAAGGAGTCGTTAACGAGACATTTGCGAGTCGAATGCAATCGTGAACCGGCATTTTCCTGTGAAGTATGCGGTCGTAAATTTAAGCACAAGCATCATTGGACAACTCATAACAGAATTGTTCATTCTCTCGAcggAATTCTTCAAAGTATATTAACGCAAGGGGACGGAAATTTTAGACAGGAGGAAGTCCAAACTTGGAGTACATTCAGTGAACAAGAACAACATTATAGCAACGAAATTCCATCGCAAAATCAAATGGTCCAACAAAATTTGCAggagaaaaataaatcttttcgtTGTCCAATTTGCACTAGACGATATGATGGAAACGTGACATGGCCCAAAACGGAGTGCTTAAACAATAATCCATATCAAGGAAACGAAGAAGAATGGGCGTCGTCAAATCAAGATCCGGGAATTTCAAAGGATTCCTCTAACTATGTGCCAAGTACTTTCACTTGTGATTTATGTGGTAAAGTCTACACCTGGATGTACAGTTTGAAACGTCATCAAATGAAATGTGGAAACAAGGAGGCCAGATATCAATGTTCGATTTGCAAAAATCGCTACTATCGGGTTGATTCATTGAAATATCATCAGGAAACAAAGCATAATTGCTATGatttcgaaaattttgatttctattCTGATTGGAACTTTCCGGCCGGTGCTCTAGAACCATTGACAGAGGTGACAACAGCCGGCGAGGAAGACTGTGACAATTGCTTTGAATGTAGTCGTTGCAATAAGGCTTATAAAACGCTGAAAAGCCTGAGACGTCATCGTTTCCATTGTGGACGAACATTCGATCCACTTGTTCGTGGTTTTGTGCAGAATTACGACGAAAACGATGATCAGGCACAATTTCAATGTGTCTATTGTAATAGAGCCTATCGTTGGAAGAAGGGTTTGAAACGTCATCAGCAACGTTGTGAAATCAAAATGGCGCAGGAAATACAATCGGAGCCGAATCACGAGGTGAATTTAATTGACGAGAGTAATGACGATAATTCAAGAGGAAATCCAGAGGAGCCTGAAATTGATATCACTGCCGAAGATGATGAAATTGAAATCGCCGACtcaccaccaccaccacaaTCACCTGAGCAAAATCGTAAATCATCATCGCCATCAGCATCATCGTCGTTAATAGCGAGAAATCGTGATGCGACAACAGGACGTTTCCAGTGTATTCTATGCGGCAAGAAGTACGGTtggttgaagaatttacgaCGACATCAAAGAATTTGTCGCAAGAAGGCCAATAAACATCGTTGGAAAGAATGTAAGGTGATGATTGAACCATTGCCATTGAAAACATCAAAACGAATTGCCGAGCAGAATTTCAAGTGCTCCAATTGTTTTGAGCAATTCAAATGGCTGAGAGAATTGAGACAGCATCAAACCAATTGCATGAAGAAGGCACAAAATTTGTGGAATGTCAGTGAAGCAAAAAGGTCATCGAATAATCAAGAGAAACAACAGCCTGGTGGTGGTCACTCGAGCGAAAATTCCAATCAGGAGGACTTAGATCAATTGTATAAATGTGCATTCTGCATGAAGGAGTATAAATGGCGTCGAAGTCTCAGACAATTGGCAAACTCACAATGGAAATATCAATGTAGAACGATAAATGATGCAAATTGGACGGCAGGACTTCCTTTCGACGTTGAAAATGAATATGAATGCGTGGACAAAAATCATGTTATGGGACAAAGTCACTTTGAATGTTCACGTTGCGGCAATCGTTACACATGGATAAAGAGTCTTCAGCGTCATCAAATGATTTGTGGgaGATGGATTGAGGATGAGAATTGGCAAAGGCATGAAACTTTTGGAAGTAATTATGAACAGCAAACATATCAGTGCAGTGCTTGTGGGCAATCTTACACTTGGTTGCACAATTTGAAACGTCATCAATTAAAATGTGGCAGCAACAAAGAGGCTAAATATCAATGTCACATGTATCCGTTTGCTTATGTTGATGTTGCGCACAGAATCATTGAGAGATTACAGCATCCACGTCGACGTCGTGGGACGTATACGCCGCCGGAACAGCGACAATTTTTTTGCTCCGCGTGTGGCAATGGCTATAAATGGAAAATCAGTTTGAAAAGACATCAACGACTCGAGTGCGCTAAACAGCCAAAGTATTCTTGTAACATATGTGGAAAATTGTTTTACCGTCATTATTTACTGAGGGATCACATGACCAGTCTATTTAGTAATGTTCAGCAACAATTGCAGGGGCAACATGTACTACAGCACCATCAACAAGCAcaagaacaaaaattacaaCCGCAATATCAGCAAGTACAACTACAGGAGCAGCAATTGCAACAACAGCATTATCAACAAAGTGGTCCAGTGGTTCAGAATAATTCTTCATCATCAACACGTACAATTCTTCCCAAGCCAACAAACACAATGGGCTTGACGACTGTTCTTGTTCCATCGGCTTATGGTGGACAGACAAAAATTGCATACATGAATGtgccaaaaaatatgtttgatcAAATGTATCCCATGCAGCAATCGCCATTATTGAAAATCAATCTTTGCGAGAAATGCAAAAGAGTTTTCACCGATCAATCTCTATTTATGCAGCATGTGCATAAATGTTTCTTTTCGGATAGTTACGAAACCTCCGACGAATACAGCGCATTGTGGATGcttgaaaaaaatactcaaaatctTGAATTGAATTCACAAACATTGCCCGGTATTCGAAAATCCTATCGTTGGAAATTAACTGGTTTGGACCGTAACTACGAGTCAAATATTGGAGCATCATTCTCACAGGACGCTGGAAAAATGGTTCGCACACAATTGTCCGAATACATTTGTTCCGATTGtgaTGAAACATCGACATCGTCGTCGAATTGGACAATTGATAAGTTCTATCAGTATCAAACATTGTATTTTCAAATGATGGCTAAAAATCAAAGAACAGAGGCCGTTATTTCTGGGATAATTAAtgatcaaattaaaaatgaaattgagaATAAGGGACAGCAATCGAATGGCAATAAAGTAAATTCAGAgcaacagaaattaaaaaatcccgTATCACGATCTTGTGGTTATATGGGTTATTCGTGTCCACGTTGTGTTTGGGATGACGCTGATCCATTGGCATTTGATGCGGAGATTggttatcatcatcatcatttagCGGATAGTGCAGGAATTAATCCACCTGGTAATGTTTGCAAAAATTGTGattatTACTATCAACAACAGCATGAATCGTATTCGGCAATTCCCTATAGCGATCACGTTCTTgagaaaattgaagaatttgttGTTTCGAGTACAAATAAAAGATCcAGAAGAGTACGTGGTCGTTGTAAAGTGTGCTATGAATATTGGAAAAGACAATTGTCAAGTAGAGAGGCGTGCAGCAAAGGAATTAGAGTTTCCACTTATTGTAGAACGTGTCCCGATAAACCGTTTCTTTGCACAAAATGCTTCGGGCCATATCATGGAATTTTTCAAGAACTTATGGAGTCGTCAATTCTTCTTGTTAACGTTCAGGGATCGTATGGTGAGAATGAATCGACGGGAATCAATAGTCAAGAGAGTGGAAGTCAATTGAATTCATCATCAGGAACAGGAACATCGTCATCGTGGTCATCGCATGCGGATTCACGTTCTTATAAtgcgaatagaaaaaaattttgctgcCCCCGTTGTAATAGAGGTTACACGCGAATATACGACATGAAAACGCACTATCAATTTCAGTGTGGCAAAGCGCCACGCTATCAGTGTCGCTATTGCGCTAAAACTGATAAGTTCAattacAGTACATCGATTGACGTGAAATTCGTTTGTCCACAATGCAAACGAAATTTCCGACGAATGAAAGGATTAAAGCAGCACATGACTTATGAATGTAATCGACAACCACGTTTCCAATGTCCGTATTGTTGtcaacgttcgaaacttttgtcaaatttgtacaAACACGTGCGACGAATTCACGTCGGAAGTAAAGTCTGGGGCATTGATCTTCATCAGCAATGA
- Protein Sequence
- MRKLWVCFQCGKRYSWRGSLQNHRRVECQKEPTFCCPVSGEGAWTCFQCGRNYRWKESLTRHLRVECNREPAFSCEVCGRKFKHKHHWTTHNRIVHSLDGILQSILTQGDGNFRQEEVQTWSTFSEQEQHYSNEIPSQNQMVQQNLQEKNKSFRCPICTRRYDGNVTWPKTECLNNNPYQGNEEEWASSNQDPGISKDSSNYVPSTFTCDLCGKVYTWMYSLKRHQMKCGNKEARYQCSICKNRYYRVDSLKYHQETKHNCYDFENFDFYSDWNFPAGALEPLTEVTTAGEEDCDNCFECSRCNKAYKTLKSLRRHRFHCGRTFDPLVRGFVQNYDENDDQAQFQCVYCNRAYRWKKGLKRHQQRCEIKMAQEIQSEPNHEVNLIDESNDDNSRGNPEEPEIDITAEDDEIEIADSPPPPQSPEQNRKSSSPSASSSLIARNRDATTGRFQCILCGKKYGWLKNLRRHQRICRKKANKHRWKECKVMIEPLPLKTSKRIAEQNFKCSNCFEQFKWLRELRQHQTNCMKKAQNLWNVSEAKRSSNNQEKQQPGGGHSSENSNQEDLDQLYKCAFCMKEYKWRRSLRQLANSQWKYQCRTINDANWTAGLPFDVENEYECVDKNHVMGQSHFECSRCGNRYTWIKSLQRHQMICGRWIEDENWQRHETFGSNYEQQTYQCSACGQSYTWLHNLKRHQLKCGSNKEAKYQCHMYPFAYVDVAHRIIERLQHPRRRRGTYTPPEQRQFFCSACGNGYKWKISLKRHQRLECAKQPKYSCNICGKLFYRHYLLRDHMTSLFSNVQQQLQGQHVLQHHQQAQEQKLQPQYQQVQLQEQQLQQQHYQQSGPVVQNNSSSSTRTILPKPTNTMGLTTVLVPSAYGGQTKIAYMNVPKNMFDQMYPMQQSPLLKINLCEKCKRVFTDQSLFMQHVHKCFFSDSYETSDEYSALWMLEKNTQNLELNSQTLPGIRKSYRWKLTGLDRNYESNIGASFSQDAGKMVRTQLSEYICSDCDETSTSSSNWTIDKFYQYQTLYFQMMAKNQRTEAVISGIINDQIKNEIENKGQQSNGNKVNSEQQKLKNPVSRSCGYMGYSCPRCVWDDADPLAFDAEIGYHHHHLADSAGINPPGNVCKNCDYYYQQQHESYSAIPYSDHVLEKIEEFVVSSTNKRSRRVRGRCKVCYEYWKRQLSSREACSKGIRVSTYCRTCPDKPFLCTKCFGPYHGIFQELMESSILLVNVQGSYGENESTGINSQESGSQLNSSSGTGTSSSWSSHADSRSYNANRKKFCCPRCNRGYTRIYDMKTHYQFQCGKAPRYQCRYCAKTDKFNYSTSIDVKFVCPQCKRNFRRMKGLKQHMTYECNRQPRFQCPYCCQRSKLLSNLYKHVRRIHVGSKVWGIDLHQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -