Basic Information

Insect: Leptopilina drosophilae
Gene Symbol: -
Assembly: GCA_032873175.1
Location: CM065480.1:54190610-54195428[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00067 0.14 14.0 0.7 1 23 159 182 159 182 0.95

2 9 0.049 10 8.1 2.3 1 23 205 228 205 228 0.93

3 9 0.025 5.1 9.1 0.2 2 20 290 310 289 311 0.93

4 9 2e-08 4.2e-06 28.2 2.0 1 23 382 404 382 404 0.97

5 9 5.4e-05 0.011 17.4 0.6 3 23 421 442 420 442 0.94

6 9 1.4e-05 0.0029 19.2 1.3 1 23 448 470 448 470 0.98

7 9 0.0056 1.1 11.1 2.0 1 23 476 498 476 498 0.97

8 9 0.00016 0.032 16.0 2.3 1 23 504 527 504 527 0.98

9 9 0.056 11 7.9 0.9 1 23 534 556 534 556 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00067	0.14	14.0	0.7	1	23	159	182	159	182	0.95
2	9	0.049	10	8.1	2.3	1	23	205	228	205	228	0.93
3	9	0.025	5.1	9.1	0.2	2	20	290	310	289	311	0.93
4	9	2e-08	4.2e-06	28.2	2.0	1	23	382	404	382	404	0.97
5	9	5.4e-05	0.011	17.4	0.6	3	23	421	442	420	442	0.94
6	9	1.4e-05	0.0029	19.2	1.3	1	23	448	470	448	470	0.98
7	9	0.0056	1.1	11.1	2.0	1	23	476	498	476	498	0.97
8	9	0.00016	0.032	16.0	2.3	1	23	504	527	504	527	0.98
9	9	0.056	11	7.9	0.9	1	23	534	556	534	556	0.97

Sequence Information

Coding Sequence: ATGAGTGAAGaagaacaattaaaaacaacaaaatccTACTGGAGTTGTAATATAAATGCAGAAAATTTCTCCCTAGAATCACCGGgcgatttaataaataatgtccTGACTATTGAGGAATCAAAAGGCGAAGAATACACGCAAATTGATTCTCTGGAGggtattgatttaaaaaaggaGAGTCAGGGAATTTCTTTGGTTTCAATAGAGGGGCAAATTTATGCCTTTAAAAATGATGAATTCCAAAGTGTTGAGGAATCGGAATTTTTAGATTACAATAATCATGGTGATGATAATATTCTTCCAATTTCGGAAGAAAATGATGAACGTAATGAAACGACATTTGAAGCTTTTTCCGAGGACGTGCACAATGACAAATGCTATGAAAATTTTACCAATCATCAGAATCATCAAATAAAAGACGAGGaggaaaatcaaataaatgaacATGATCTTGTTGAAGTGGTGACaacatttaaatgtaaaatttgtccCTTCTCCTCGCAGGACAAATCGGAATTGCTCTCTCATTTGCAGGATACACACGTTAATCCCAATAAGGAGTTGAAGGAGACGACAATTGTCGATGAGACggataaagtaaaattggttTACATGTGTGGCGAATGCTCCGTTTGCTTCTCAACGATCGAGGAATGCAAGAAGCACATGATAGACGACCATGAATTGATAGATCGCAGTGGCAAACGACAGAGTACGGAAAGTAGTTCTAGTTTGGAGTCTACCGAATTATTGACCGATGACAATAATATTAGCGCTGAATCATGttcggaaaataaattaattaaatctccGGAAGCGAAAAACGATCAACAGAATGATGTTGATGTAAAGGAGAAAAAAGTGAAGTGTACGTATAGAGGTTGTCCGTATAAATTTAGTAACAGTGAAAAAATGCAACAGCACGTAGTTTGTCACGATGACATCCAAAATGTAAATCGTTTCAAGTGCAACTTTTGTCGACAAATTAAATTCTCCAAATGGAAACAATGCAGTTTACACCTGTGGAAATCACATCAAATAGACATCGATCTTCTGTCCTGTAACATTTGCAATGTTTACAAAAGTACGGCAATGGTGAAAATGATAACGCACATGAAAGTCCATAATGTGAATAAGGACTACGAATGTCCCGACTGCGGTAAATGCTTCAAGCAATCGAGCCAATTGCGAAATCACAGAGTCATTCATTTAGATCGTAAATCAGCGGAGATTCCACGTTGGTATACGTCGAAAATATGCGAATTGTGCGGAAAAACGTACGCAGATTCGAAGTGTTTGAAGAATCATATACAAGCCGTTCATTCGAAATTACGTCCTTACGTTTGCACAGTCTGCGGACATTCGAGTGCGAGAAAATCCATGCTGCAAATGCACCTGCGACAGCACACTGGTGACAAACCGTTCAATTGCGAATTATGTGATTATAAAACCGGTGATCATAATTCTCTGCGTCGCCACGCCATGAGGCACACAGgagTTAAACCCTATAAGTGTCCGCATTGTCCATATTCGGCGATACAGAGCAATAGTTACAAAAATCATTTGCGATCGAAGCATCCATTGCTCTCGGGCGTATTCACTTGTGAATTGTGTTCATTTGAAACAGTCAAGAAGGAAAGTTATCTACAACACATCAAGGACCACGAGAAAGGTTTCATTAAAGTTTCCAACCAGAATAAAGATGGCGAGAATGTTGAAGTTTTTCCCGGCAACATTGCGGCAGCTCAATTAATATACAGTTGTTTGGGCGCCTTTTCGAAAGTCGGCAGAACTAtagaagcaaatttaatgtcatCGTCAACGTCTGCGGATGGAACATCGCAAACAATAACGATACAAATCCCATCGAAGCATCTTGAAGGAACATTGCCATCGAAGGAGACATCTTTAAAAACCGTGCCACCGATAGAGCAAGAGGACGAGGAAACAATGcattgtttcttgaaaatacCAAGGGAGGAGGAGGAAAATATTGACACTGGCGGTATAACAATACCCGCCGAGCCAGAAGACACACAAATGGACATTGAAAAGTGA
Protein Sequence: MSEEEQLKTTKSYWSCNINAENFSLESPGDLINNVLTIEESKGEEYTQIDSLEGIDLKKESQGISLVSIEGQIYAFKNDEFQSVEESEFLDYNNHGDDNILPISEENDERNETTFEAFSEDVHNDKCYENFTNHQNHQIKDEEENQINEHDLVEVVTTFKCKICPFSSQDKSELLSHLQDTHVNPNKELKETTIVDETDKVKLVYMCGECSVCFSTIEECKKHMIDDHELIDRSGKRQSTESSSSLESTELLTDDNNISAESCSENKLIKSPEAKNDQQNDVDVKEKKVKCTYRGCPYKFSNSEKMQQHVVCHDDIQNVNRFKCNFCRQIKFSKWKQCSLHLWKSHQIDIDLLSCNICNVYKSTAMVKMITHMKVHNVNKDYECPDCGKCFKQSSQLRNHRVIHLDRKSAEIPRWYTSKICELCGKTYADSKCLKNHIQAVHSKLRPYVCTVCGHSSARKSMLQMHLRQHTGDKPFNCELCDYKTGDHNSLRRHAMRHTGVKPYKCPHCPYSAIQSNSYKNHLRSKHPLLSGVFTCELCSFETVKKESYLQHIKDHEKGFIKVSNQNKDGENVEVFPGNIAAAQLIYSCLGAFSKVGRTIEANLMSSSTSADGTSQTITIQIPSKHLEGTLPSKETSLKTVPPIEQEDEETMHCFLKIPREEEENIDTGGITIPAEPEDTQMDIEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00882473; iTF_00883325; iTF_00880756; iTF_00879997;
90% Identity: iTF_00882473;
80% Identity: -