Ldro034629.2
Basic Information
- Insect
- Leptopilina drosophilae
- Gene Symbol
- -
- Assembly
- GCA_032873175.1
- Location
- CM065486.1:1708514-1723640[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.015 3 9.8 0.4 6 21 12 27 6 28 0.86 2 14 8.5 1.7e+03 1.1 0.0 2 20 34 52 33 54 0.82 3 14 6.1 1.2e+03 1.5 0.1 1 12 232 243 232 250 0.91 4 14 0.022 4.6 9.2 2.1 1 21 388 408 388 409 0.95 5 14 1.8e-05 0.0037 18.9 0.1 3 23 415 435 414 435 0.97 6 14 6.5e-05 0.013 17.2 1.0 1 23 447 469 447 469 0.97 7 14 0.0019 0.38 12.6 0.5 1 23 488 509 488 509 0.91 8 14 0.00035 0.072 14.9 0.1 2 23 515 536 515 536 0.95 9 14 4.8e-05 0.0097 17.6 4.8 1 23 584 606 584 606 0.99 10 14 2.1e-06 0.00042 21.9 3.7 1 23 612 634 612 634 0.96 11 14 0.00024 0.049 15.4 4.1 1 23 640 662 640 662 0.97 12 14 1.6e-05 0.0033 19.1 0.8 1 23 668 690 668 690 0.97 13 14 0.00022 0.044 15.6 0.4 1 23 694 716 694 716 0.98 14 14 0.00039 0.08 14.7 0.2 1 23 724 746 724 746 0.97
Sequence Information
- Coding Sequence
- atgggGTCGATGAGTTTAATTTGTCCAATGTGTTGTGGAGAGACTTTCACGAGTTCGCAATCGTTGAAATACCATCTGCTTAGTATGACGGATAATTTATATTGTCCGGGATGTTCCGAAAGATCGGATTCTGTTTTGGCATTGATTGAACATTTGGATTATTGTGGACAACCGGACAGCGAGgcgaaattaaatttgaagagGAAGAAGCACGAGAAGGACTGTCAACTTTTATTGAAAGAATTGCAATCTGAcgaaaagaagcaaaaaatcgaGCAAAAAACTAAAGATGACAAATCGCCAAAGGAAGTGACAACAGCAAAAAACGAAGAGAAAGAAAAAGGGAAGAAAGTGACGAAAATCCAGTCGACGTCGCAGGCGAAATTGAGGAAGATCGAAAAGGTTTTGgtgaaaattgataataaatatttgaagagaaaaaaCGAGATGCAGGATCCACTGATGGAATTGTCGATACCAATcgtcgacgacgacgacgaagaCGTTGAATTGGACGAGAAAATAATGGAGAAGCACGTCATTGCAATATTGCCGGACGGCTCGGAAATTTTTAACGACGACGAGGACGCAGTGATTACAATGGATCATATTCAGGAAATTGACGAATCGAAATTAATGAAAGTCAAGGAAGAATTGAGTGAGGTAACAAGCGAAAAGGTTTCAGATTCGCTCTACAATTGCAGCAGCTGCTCGATGAGTTTCAATTCAGTGTTGGAtcacataaaagaatttcaCGACGGCCAGGAAGTGGTTTTGGAAATGGCCGATCAACAGTACGAGGAATTGACGTCACCGACGATGCCAATCGAGGCCGAGGAATCGTCTTCGTcgtcgacgacgacgacgacgacgacaacgCAAAAAAGACGCTCCCGTCAAACGATGAACACTCTGAGAACTGAGGAGTGCATCGACAGCGAGGGCAGACTCTACACGAGGAAAGTCGTTCAAATCGAGAGATTTTGGGATCCACCGGCTCCAGCGCCCGCGCCCAAGTCGTCGATGATCGAGAAATTCTTCTCTAATGCCGAAGGTGTTAAGGTGAGGGAGAAAGGCGGCAGTTCGTCAACGTCAACAACGACAAcggcagcagcagcagcaacaacgacgacgacgacaacAACAACGTCGAATCGCATCTACCGCTGCACGGAGTGTTTGGAGAATTTTCCCAAACTCTCGGAATTTCGTACGCACACTTGCTCGCAGGGGAACAAAAATTGCGAGATCTGCGACTTGTCCTTTGCGAATTTGAAGGCACTGCAGTTGCACATGAAGGTGCACGAGATGGACACGGACGGCAATCAACAGCGAACGTTTATCTGCGGAATTTGTGGCACTGAATTCGCGACGCACAAAAGTTTGCGACTGCATTCGCGGATGCACGCGCCGGTCAGATCGCGACACGTCGAGGCGCCCGAAGGCACCAAGGACACGACGTTCACCTGCTTCGAATGCGGTAAAACATTTTCGGAATCGTATCGAGCTGTTCACATGGCGTTGCACAGCGGCGACTCGGCGACGTGTCCGATTTGCAATCGGAAATTCGACTCGATGGACAGTTTGACGATGCACGCGGCAGTGCACGTGGAGGCGAATAATTCGCAGTCGCCGCCACCGCCCGTCGAATTAGCGGCGACAACTTCGTCGTCGACCAGCGAGACGGCGAGCACGAATTCATCGGCGACAATCGCCGAGACCGAGAGCAAGGAACAGATCCAAAAGCCCTATCAGTGTCAACATTGCGGCAGAAGATTCACTCGTCCTCACGAGAAAGTCAAACACGAACGCATTCACACCGGCGAGAAACCTCATGCATGCGAGgtCTGTGGAAAAACATTCCGTGTCTCCTACTGTCTGACACTTCACATGCGAACGCACACTGGAGTTCGTCCCTACGCGTGTCAGCACTGCGGCAAAAGATTCAAAGCCTCCTCCGTCTACAATCATCATCTCCTCACACACGGCGACGTTCGCGCCTACAATTGTCCCTTCTGTCCGAAGACATTCAAGACACGCGTCCAGCTCGCCGGCCACAAGAACAGTCACACGAAGCCCTTTCACTGCACCGAGTGTTCGCGGCCCTTCGCCTCGTTGTACGCGGTGCGCGCCCACATTGAAACGCACAAGAAggacaataatttgaaattcagCTGCTACATTTGCGGCGCCTCCTATGGCCGGGCGTTCGCCCTCAAGGATCACTTGAAGCAGCACGGCGCCGACATTCAACAGACGCCGGAGCCAGCGCGCGAGGAAGAGGTGCACGAGGGCGAGGAGGAGTACATTCTCGCCGAGGAGACGGAGATCGATCCCGAGGAACTCGTCATTCCGAGTCCAATTCGAAATTCAGCCGAGTCTGATTAG
- Protein Sequence
- MGSMSLICPMCCGETFTSSQSLKYHLLSMTDNLYCPGCSERSDSVLALIEHLDYCGQPDSEAKLNLKRKKHEKDCQLLLKELQSDEKKQKIEQKTKDDKSPKEVTTAKNEEKEKGKKVTKIQSTSQAKLRKIEKVLVKIDNKYLKRKNEMQDPLMELSIPIVDDDDEDVELDEKIMEKHVIAILPDGSEIFNDDEDAVITMDHIQEIDESKLMKVKEELSEVTSEKVSDSLYNCSSCSMSFNSVLDHIKEFHDGQEVVLEMADQQYEELTSPTMPIEAEESSSSSTTTTTTTTQKRRSRQTMNTLRTEECIDSEGRLYTRKVVQIERFWDPPAPAPAPKSSMIEKFFSNAEGVKVREKGGSSSTSTTTTAAAAATTTTTTTTTSNRIYRCTECLENFPKLSEFRTHTCSQGNKNCEICDLSFANLKALQLHMKVHEMDTDGNQQRTFICGICGTEFATHKSLRLHSRMHAPVRSRHVEAPEGTKDTTFTCFECGKTFSESYRAVHMALHSGDSATCPICNRKFDSMDSLTMHAAVHVEANNSQSPPPPVELAATTSSSTSETASTNSSATIAETESKEQIQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYACQHCGKRFKASSVYNHHLLTHGDVRAYNCPFCPKTFKTRVQLAGHKNSHTKPFHCTECSRPFASLYAVRAHIETHKKDNNLKFSCYICGASYGRAFALKDHLKQHGADIQQTPEPAREEEVHEGEEEYILAEETEIDPEELVIPSPIRNSAESD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00880681;
- 90% Identity
- iTF_00882399;
- 80% Identity
- -