Ldro005952.1
Basic Information
- Insect
- Leptopilina drosophilae
- Gene Symbol
- -
- Assembly
- GCA_032873175.1
- Location
- CM065479.1:185093-192888[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 7.1e-06 0.0015 20.2 1.0 1 23 192 214 192 214 0.98 2 32 0.031 6.4 8.7 1.5 1 23 237 260 237 260 0.96 3 32 3.1e-05 0.0063 18.2 0.5 2 23 267 289 266 289 0.97 4 32 0.00016 0.033 16.0 1.0 1 21 309 329 309 330 0.95 5 32 0.43 87 5.2 0.4 3 23 429 449 427 449 0.93 6 32 0.058 12 7.9 0.1 1 23 455 478 455 478 0.95 7 32 0.00013 0.027 16.2 0.1 1 23 546 569 546 569 0.96 8 32 0.0092 1.9 10.4 0.4 1 23 575 598 575 598 0.96 9 32 0.14 28 6.7 1.5 1 23 611 633 611 633 0.97 10 32 4.1e-05 0.0083 17.8 0.9 3 23 677 698 676 698 0.96 11 32 0.51 1e+02 4.9 0.1 1 23 731 754 731 754 0.93 12 32 0.16 32 6.6 0.9 2 23 761 784 760 784 0.94 13 32 3.6 7.2e+02 2.3 0.0 2 23 793 815 793 815 0.84 14 32 0.29 59 5.7 0.0 2 23 822 844 821 844 0.92 15 32 1.5e-05 0.003 19.2 1.2 1 23 852 874 852 874 0.98 16 32 0.017 3.6 9.5 1.1 1 23 912 936 912 936 0.97 17 32 0.00024 0.049 15.4 3.3 1 23 939 962 939 962 0.97 18 32 0.048 9.8 8.2 0.5 2 23 969 991 968 991 0.95 19 32 0.0037 0.75 11.7 5.1 1 21 1021 1041 1021 1042 0.95 20 32 0.0031 0.63 11.9 1.8 2 23 1056 1077 1055 1078 0.93 21 32 0.33 67 5.5 2.7 1 23 1081 1103 1081 1104 0.95 22 32 0.037 7.6 8.5 3.1 2 23 1111 1134 1110 1134 0.93 23 32 3.5 7.1e+02 2.3 0.2 2 23 1142 1164 1142 1164 0.94 24 32 4.2 8.5e+02 2.1 0.0 2 23 1171 1193 1170 1193 0.87 25 32 0.26 53 5.9 2.7 2 23 1202 1224 1202 1224 0.96 26 32 0.33 68 5.5 0.9 2 23 1230 1252 1229 1252 0.93 27 32 3.4 7e+02 2.3 0.1 1 20 1351 1370 1351 1372 0.93 28 32 0.27 55 5.8 0.9 1 20 1388 1407 1388 1409 0.94 29 32 0.37 74 5.4 1.9 2 23 1498 1520 1497 1520 0.94 30 32 0.4 82 5.3 0.3 2 23 1527 1549 1526 1549 0.94 31 32 0.19 39 6.3 1.8 1 23 1560 1582 1560 1582 0.97 32 32 0.042 8.5 8.4 0.6 3 20 1591 1608 1590 1609 0.94
Sequence Information
- Coding Sequence
- ATGATCACCTGGTATATATCAGTGACTCATTCCATACGAatagcAGAGAATGATCGCCTACCAAAGTGTCTTTGCTATCGTTGCAtgtacaatttagaaaatttttacgaCTTCAGGACAGCCTGTGTGAATGCAGTTGCTCTTTTAGAAAGGTGTCTACCTCAAGATAAAGATAGAAATGAAGAAAACAGAAGAAATCCACCAGAACATTATTCAGAACTACGAACTGAACTTCTTAAGAAAAAACAACATATGCCAATACTCATTCCAGAAGCCCCCGTAGTTAATCCAAATGCAGCTTTAGGAACACCACCGAGACTTAATTCCGATGGCGAAGCGGATAATGATGATGAAGAAATTTTGGAGCAGAGCGGTACCGAAGAAGGAATGGATGATGCAGAAGACAGAAAATCAGAGGAGTATGAAATGGACATGGAAATGAATCCCAgtgattttttggaaatgacACCAATGGTTACGGAGGATGTGGAAGAAAATATAAGAGGTGGAATTGTTTCCACGCGAACGCAAAATTCAAGACCATCACACCATAAATCTGAGCAACATGAAGTTTATGTTTGTTCACTTTGTAACAAGGCATTCAGCTCGAAAGGTCATTTGTCACTTCACGCTAGAATACATGTTGGCGCAGGTGATGTAATCGGTGAAAAAGTTATCACCGACGATCACACTTCTTACAAAAGGCCCTATCAATGTGACTTGTGTTATAAGGCTTATTCAACTGCAAAACATCGATGGGGTCATGTTTCAACAACGCACAGAGGACATCCTGCGGTAACATGTAGTTATTGTTCGCGCATTTATTCAACGAGAGGAAATCTAGAAGAGCACATTAGGTCAAGACACGCTGGTCTGCCACTTCCACCGGAACTGCCAGTTTCCTACGTTCAGCctgaaaataaatatcaatgTAAAACATGTCCCAAGATGTATACGAATACCACGGACCTTAATAAACACAGTCGAATGTGTACAGGTGTTCAGCAAAAGGAATTgccaaataatttaataatagaaaagttGAAGAAAAGTCACATTGACACGTCAGACATGTCGAGTAATGAGTCAACTGACGAGTCTAAGGAATACAAAAATGCCGAAGCGAAACTAGCGAAGAATCCACAACTTACCATTCTTAAACAGGCACTTACCAAAGGAGACAATCTAAAGAGAAGTTATGACGAGAAATACAAAATTAGTTCAAAATCAAAGAAGCAAACGGGAACCGAGAATAGTGAGACTGATGTACAGAAACGATGGTTCTGCGAATCTTGTTCTCAGAATTTCAACTCTCTGGAGAGTTTCAAAGAACACGAACTCGCGCATGAAATGGAGAAACCCTATGTTTGCTTACTTTGCGAGAAAGATTTTGCACAGAAGTCAATTCTGGGTAATCACATTGTTACGATTCATGGCGTCGATCCGAATCCGATTCTCGAGAGTGATAGATGTTTAAAGAAGTCTCAACTCTGGGACAAGAAACAGGATTCGAACGGTAAGAATTTGACAATTAAACGAGAGGAATCACCAATTACATATCCAGAAGCAGTTTTGGAGAATGATGACGATCAGCAACAGACGGAAACTAATAAAATGATTGAGATTGAAACAGTTTTTGTTTGTGAAATTTGTACCCGAGACTTCAATGACAGAGCTTCATTGTGGCTTCATATACGCGCAACTCACAAAGAATTTGCCGCTTTCGCTTGTGgtgtttgtttaaaaatctgCTCTGATAATGCCCAATTACTCAATCATGTCAACATGTATCACGGTGGTTCGAAACTTCTCATGTCCGAGCAGAGGCGCTACAGTTGTACAATTTGTGGAAGACAGCACGATTCCCGCAAGAAGTTAATTACCCATGTATCAATTCACAACGTTGACCCCAGCTACGAGCCTGCAAGTTTCGTTCAACTGAACAGCAATTACTATAACGAGAATCTAAATAGCAACGAAGGAAACGAGCAAATGGATGGAGAGGTCGAGGATGGCGAGAAGGTCGACTGTTACATTTGCTACAAATCGTTTCCCAACGAAGATCATCTTATAAGGCATCAACGAAACGCTCACAAATCCGATCCAGCCGTTGCAATTGGAGAATCTGCGTCAAATGGCAATGTTCCCGGACCCAATGGAAGTGGAAACAGAGCACAATACCATTTGTTCTTCATTTGTGAACTCTGCGGAAGTTCGTATCCGAGTAAATGGGAACGATGGCTTCATGTTTCGAGTGTCCATGGAAATGAATCTTCGATAAAATGCGAAAGAGAAGATTGTGCGAAAATATTTGCCACTAAATCGTTGCGCAATGAACACGTTCAACATCACATGATTCAAGGCAGTTCGCCCAACACTTGTGAGATTTGCGGAAAACTGTGGGGCAGTCGAGTCGATTACTGGAAGCACGTGATGGGCGTTCATTCGGACACTGTGCCTCTAATTTGCGGAGTTTGCCTCAAAGTATTTCCCAACGTTCTGCAACTGAGTTCCCATGTTAAGGCAAATCACTGGCCGCTAACTAATGGCGATTTCAGTTGCGACATTTGTGGAAGACCTTATTCGAACAAGTCGAAAATGTCGAGGCACAGAAAGATTCATGGTCTCGATGGTGATGGGCATGCCAATCCGGATCCTGGCGAGTATATGAATAACGACACGGGACGTTTCGATAatggaggaggaggaggaggaggaacAACTGAAGTCGATTTCAGTTGTGAAATGTGTGGGGATTTAAAGTTTGTTACACTGGAGGATCTCTGCAATCATAGAAGAATAACGCACAGTCTGTTCCCTTGTGATTTGTGCAACAAATGCTATGGAAGAACGTCACATTTGTGGAAGCACGTTAATCGTGTTCATAAAGGTCACGAGGATGTGACTTGTCGATTTTGTCTGAAAACCAGCGCCTCGAGGGAACATTTAGCTGCACACATTGCGAAAATCCACAGATACGAACCTGAGGTGAAGAACAATGTGCGAGAGCCAGCAAATCACAAGCAATCACATAACACTGTAGCTGAGGACGAAATTCTCCATCACTGCGAGAAGTGCAACAAAGGTTTCCACAAAAGGTATTTATTGCGACGCCACATGAAGGGTTGTCAGAATTATCGGAAAGATCCCGGAGCACTTTTGACCCGATGTCGTGCTTGCGAGAGAATATTCAAAGATCGAGCGAGTCTTCAAAAGCACATCGAGAATCATCACAGTAGTTACACTTGTCATTTGTGTAATGAAACAATCACTTCGAAATTGGCAATTATGACCCATAATCGAGTTCATCACATGGACCATCCGGATCTTACCTGCGACCACAGTAATTGTAAGAAACTTTTCCGGACGAAAGAGGATCTTGAATCTCATAAAAAAGATCATAGATATCACAGTTCACCGAATGTTTGCGATTTTTGCGGTGACACAGTGGAAAATAAgctgaaattaaaaatgcacGTCTTGTCATTGCATCGAAATGAAATTGGCGTCTCGTGTGGAGTTTGCTTAATTCCGATGAAGGATCCAAAGGACTTGAAGAAACACGTCGAGGACTCTCATAaggaaattctattaaaaccaAATACTTGTCAGGTTTGCGGCAAGCAATATGCGTCAAAGTGGAAAGCTTTTGATCATACAAAGAAATGTCATgggaaagtttttaaaacttgtaAACAGTGTTTGGCTGTGTTCATAACTGAAGAAGATATGAAGAATCATTATGAGCATATTCACAATGTTCCAAAGGATCAACTGGCCACTTACGAGTATCGCTTGGAAATTGGACGCAAACGTCACTACGATTCATTGGAAATTGTCATGAAAGAAGAGCCAGAGGAACTTGAGTTCTACGAAGAACCTGCTGAAGATTATTCAATGGATTATAAGAGAAGAATATCTGAATCGGATTACGACTATGATGCACGAGGTTATTATCAAAGGGAGGCGAATGACTTGGACGAGATGCATTTGGCAAAGAAGATGAAATTGGATTCTAGCGGTAAGAAGATGATGATGGACCGTGAAAATTATGAATGTAGACCCTGCAAAGTTCAATTTGAAACAAAGGAACAATTTTACGATCATATTGTCGTTTGTCGTAATCTTACGATTGAACAGAAAATGAACGATCAGGAAAGTTATGTATGTAAGTCTTGCAATTTACAATTCGACTCCAAGGAGCTGTATCATGAACATCTTTTCGTTTGTCGTTGTCTACCGGAAGTTCCCAGTTTTTCGACGTCAATTCTCGAGGCGCACTTGAAGAATAATAATCAAATCAAGAGAGAGGATGaacttgatgaaaataatttaaatactccAGATTTCAATCTTTTTGAAGATATAAATATGCAACTGTCAGGTCAGAGACCAGTTCAAAATTTATCACTAAAGTCTTCCTCGAGTAGCAATAAATGTTCGAGGAAAGATTCAAGAAAGGTTTACGATGAATCGACAAATACCGAGTGTACTTGCGAGGTTTGTGGAAAACAATGGCCTGCCAAGAAACACTTGTGGCAACATTTGATTCGTTTCCATCGAACGGAGGCCGCAGTTACTTGTGGAGTTTGTCTAAAGTTGTGTAAGACGTATGAAGATTTGGCTGATCATTTAAAAGCCGCCCATCAAGCTCTACTCTCCTGCGAAGGTAATAATTTCACTTGTAAAATTTGCGGAAGATATCACAACGCAAGGAGCAAATTATTACTACACATGAGCATTCATATCAATTGCAAGAACAATCCAATGTGCAACAAGTGTAAACGTAGTTTCGAAACTGACGAGAAATTGAAAGAGCATACTGGAAATTGTGAAGGTAGACAATCGGGTCTAGGCGTTCGGCACGACGCAGCAAATAAAGGTGAGAAAGtcgagaaagaagaaaaagaggcAGAATTTGGTTCCGAGGGTGAGGAGAAAGCTTCTGATAACGAAGAAAGCAGTTCTGATGATTCGGATGATTCAGAAACGGATAGCTCATCCAGTTCAAGTGACGAAGACGATGATGaggatgaaaatgaaaatgataatgaaaatGAAGATAATGGAACTGCACCTGAATCAAGAACAACAAGCAGACTTGGAGAATTGAGTTGCACAACTGACAGTGAAGATGATGATTCCGATAATTCAGAAGACTGTGAAAATGAGACAAGAGTAAAGTTAGAAGAAAAAGGAACGATagttaagaaagaaaaaaatattggaagaatcaaaaaagaattGACGCTATCGGAATCGGACACAAAGGACTCggctgtttttgaaaatttagaaattaaaccAGAGAAAACATTGGATAGTATGGAATATTCTGATGATGAGGGACCACCAGTTTTGAGTCCTATGATGCCTTTGTTGCCTTCACAAGAGGAAGATATGACTAGTCAGATTAacgaaatgaataaattaagtcCTATGGtgaatttggaaattaaaatgaaCGATTTGAAAAATCCGAAAACTGATATGAATTTGACTGAGGCTAATCAAACGGAATCAGAAagcgatgatgatgatgatgaaaataaaatgtgcATATATGAAGAAGCTGCGCAACTTAAAGAGGAGAATTCGGCCCCAAACACAGAAGCAGAAGaggataatgatgatgatgatgatgatgatgatggtgaTAATAATGAAGAAGAGGTAGAGGAAGAAATGGATTTTAAGAACGAAATAAATTCAGAAGTACTTGAAGAGAAAGGAAAACAGGATTCTGTTGATTCGGAGGAAGAAAGTAATAACGAAAATCTCGATGACGAAGtaggagaagaagaagaggaagaagaggaagaagcagaagaagaagaagatggaGAGGAAGAAGCAGAAGAggaagaagtagaagaagaaatGTACGAAGTTGAAAGCGAAAAGAAACAAATAGTAAACGAAAATTGTTCAGCAGACGCAATGGatcaatcaaaaataattgatgaaaattttgacgAAGCCGAGGGAGTGATACTGGAAGACGCAGAGGAAATCCAAATGGAAAATAACGTCGAAATAGAAGGAGAATTAGGCGATAATAATTCTCTCATCGAGGAAGAAATTATAGGCGAAGAAAATTATGAAGAGGAGACTAATATAGATGAAGATATTAACAATGAAGATCATTCCAtgcagaatttaaataaaactattttaactgTTGGTAAAGATGACGATGGTAATCCAATTTTAATTCGTGAAGTAGTAACTCAATACGTTTATCAAGATGATTTTGACGGCGAATCTGAATATGTACAAGTTCAAAATGatcaaaatacatttttcaatgACGAAGAAGAAAATCAGAGAATGACCGAAGAAACATTTGATGTTAACGATGATAATcttgatgaaaatattattgaGGCGAATATTTTAActggagaagaagaagaagatgatgatgatgatgatgatgatgatgaagatgatgacgatgatgatgaagaagaaGTGGAGCATGAGGAGAATATAGAGaagggaaaaataattgaaaaattaattggaaataaaattgatgGTGAGTGTGAAGAAGAGTCAAGAACAAGTGCCAAAAGTTAA
- Protein Sequence
- MITWYISVTHSIRIAENDRLPKCLCYRCMYNLENFYDFRTACVNAVALLERCLPQDKDRNEENRRNPPEHYSELRTELLKKKQHMPILIPEAPVVNPNAALGTPPRLNSDGEADNDDEEILEQSGTEEGMDDAEDRKSEEYEMDMEMNPSDFLEMTPMVTEDVEENIRGGIVSTRTQNSRPSHHKSEQHEVYVCSLCNKAFSSKGHLSLHARIHVGAGDVIGEKVITDDHTSYKRPYQCDLCYKAYSTAKHRWGHVSTTHRGHPAVTCSYCSRIYSTRGNLEEHIRSRHAGLPLPPELPVSYVQPENKYQCKTCPKMYTNTTDLNKHSRMCTGVQQKELPNNLIIEKLKKSHIDTSDMSSNESTDESKEYKNAEAKLAKNPQLTILKQALTKGDNLKRSYDEKYKISSKSKKQTGTENSETDVQKRWFCESCSQNFNSLESFKEHELAHEMEKPYVCLLCEKDFAQKSILGNHIVTIHGVDPNPILESDRCLKKSQLWDKKQDSNGKNLTIKREESPITYPEAVLENDDDQQQTETNKMIEIETVFVCEICTRDFNDRASLWLHIRATHKEFAAFACGVCLKICSDNAQLLNHVNMYHGGSKLLMSEQRRYSCTICGRQHDSRKKLITHVSIHNVDPSYEPASFVQLNSNYYNENLNSNEGNEQMDGEVEDGEKVDCYICYKSFPNEDHLIRHQRNAHKSDPAVAIGESASNGNVPGPNGSGNRAQYHLFFICELCGSSYPSKWERWLHVSSVHGNESSIKCEREDCAKIFATKSLRNEHVQHHMIQGSSPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPNVLQLSSHVKANHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLDGDGHANPDPGEYMNNDTGRFDNGGGGGGGTTEVDFSCEMCGDLKFVTLEDLCNHRRITHSLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCRFCLKTSASREHLAAHIAKIHRYEPEVKNNVREPANHKQSHNTVAEDEILHHCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSSYTCHLCNETITSKLAIMTHNRVHHMDHPDLTCDHSNCKKLFRTKEDLESHKKDHRYHSSPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKDLKKHVEDSHKEILLKPNTCQVCGKQYASKWKAFDHTKKCHGKVFKTCKQCLAVFITEEDMKNHYEHIHNVPKDQLATYEYRLEIGRKRHYDSLEIVMKEEPEELEFYEEPAEDYSMDYKRRISESDYDYDARGYYQREANDLDEMHLAKKMKLDSSGKKMMMDRENYECRPCKVQFETKEQFYDHIVVCRNLTIEQKMNDQESYVCKSCNLQFDSKELYHEHLFVCRCLPEVPSFSTSILEAHLKNNNQIKREDELDENNLNTPDFNLFEDINMQLSGQRPVQNLSLKSSSSSNKCSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRTEAAVTCGVCLKLCKTYEDLADHLKAAHQALLSCEGNNFTCKICGRYHNARSKLLLHMSIHINCKNNPMCNKCKRSFETDEKLKEHTGNCEGRQSGLGVRHDAANKGEKVEKEEKEAEFGSEGEEKASDNEESSSDDSDDSETDSSSSSSDEDDDEDENENDNENEDNGTAPESRTTSRLGELSCTTDSEDDDSDNSEDCENETRVKLEEKGTIVKKEKNIGRIKKELTLSESDTKDSAVFENLEIKPEKTLDSMEYSDDEGPPVLSPMMPLLPSQEEDMTSQINEMNKLSPMVNLEIKMNDLKNPKTDMNLTEANQTESESDDDDDENKMCIYEEAAQLKEENSAPNTEAEEDNDDDDDDDDGDNNEEEVEEEMDFKNEINSEVLEEKGKQDSVDSEEESNNENLDDEVGEEEEEEEEEAEEEEDGEEEAEEEEVEEEMYEVESEKKQIVNENCSADAMDQSKIIDENFDEAEGVILEDAEEIQMENNVEIEGELGDNNSLIEEEIIGEENYEEETNIDEDINNEDHSMQNLNKTILTVGKDDDGNPILIREVVTQYVYQDDFDGESEYVQVQNDQNTFFNDEEENQRMTEETFDVNDDNLDENIIEANILTGEEEEDDDDDDDDDEDDDDDDEEEVEHEENIEKGKIIEKLIGNKIDGECEEESRTSAKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -