Basic Information

Insect: Leptopilina drosophilae
Gene Symbol: -
Assembly: GCA_032873175.1
Location: CM065479.1:59537025-59544632[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00054 0.11 14.3 0.2 1 23 256 278 256 278 0.95

2 12 0.0001 0.021 16.6 1.8 1 23 286 308 286 308 0.98

3 12 1.3e-05 0.0026 19.4 0.2 2 23 316 337 315 337 0.97

4 12 0.0007 0.14 13.9 0.9 5 23 346 364 344 364 0.97

5 12 0.00028 0.058 15.2 4.0 1 23 371 393 371 393 0.98

6 12 6.4e-06 0.0013 20.4 0.2 1 23 399 421 399 421 0.96

7 12 1.8e-05 0.0036 19.0 0.4 1 23 427 449 427 449 0.98

8 12 1.3e-07 2.6e-05 25.7 1.1 1 23 455 478 455 478 0.96

9 12 3.2e-06 0.00065 21.3 0.5 1 23 484 507 484 507 0.96

10 12 4.9e-06 0.001 20.7 2.8 1 23 513 535 513 535 0.99

11 12 9.9e-05 0.02 16.6 0.4 1 23 541 563 541 563 0.94

12 12 0.00018 0.036 15.8 0.1 1 23 569 593 569 593 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00054	0.11	14.3	0.2	1	23	256	278	256	278	0.95
2	12	0.0001	0.021	16.6	1.8	1	23	286	308	286	308	0.98
3	12	1.3e-05	0.0026	19.4	0.2	2	23	316	337	315	337	0.97
4	12	0.0007	0.14	13.9	0.9	5	23	346	364	344	364	0.97
5	12	0.00028	0.058	15.2	4.0	1	23	371	393	371	393	0.98
6	12	6.4e-06	0.0013	20.4	0.2	1	23	399	421	399	421	0.96
7	12	1.8e-05	0.0036	19.0	0.4	1	23	427	449	427	449	0.98
8	12	1.3e-07	2.6e-05	25.7	1.1	1	23	455	478	455	478	0.96
9	12	3.2e-06	0.00065	21.3	0.5	1	23	484	507	484	507	0.96
10	12	4.9e-06	0.001	20.7	2.8	1	23	513	535	513	535	0.99
11	12	9.9e-05	0.02	16.6	0.4	1	23	541	563	541	563	0.94
12	12	0.00018	0.036	15.8	0.1	1	23	569	593	569	593	0.94

Sequence Information

Coding Sequence: ATGTCGACTGATACTGAAAAGTTTTATTCTAATTGTTTTATATGTAACAGTAAACTTTCAACAAGAAATactgttcaaatttttaatgaaaaatctggATCACGTTCTGAGAGACCTCTTGCAGAGACAGTATTCTCAGTATTGGATATTGAATCTGACTGCAATGATCCGCACTCCAGCGTTATTTGtaggaaatgtaaaaaattgtttgaagagGTTGATGCTTTAGAATCTCGTATATCTGAAATAAAAGGTGACATATTCAACAGTTACAAGCAAACTCAAAAAGTCATCTCTGAATCGTTTCTAAATGACGATGAACTTAACGATCACGATTATTTGAATGCATTGGCAATGACCAACAAGGAGAAGACGGAAATAAAGAAGAAcacaaatgtgaaaaaaaagtttttagaaaccaaaaaaataattgattctgaaGAGGGAAATGAAGATAAAgaggAAGATATGATAGAAATTGAGAAAGAATCATCGCCGGTTCAAGATGTTTCTGAACTTGTCAACTCAATCCAAGAAGGCGAAGAAGTCATTATTAAAGTCGAATCTTTGGATTACTTGAATAATGACTTGAAGAAGACAGTCTTAAAAAAACCGAAAACTAATTTGAAGGAAGAACAATCACAAGAGCAGGTTGTTTTACGAGAAGATTCAGTATACACGTGTTTATTGTGTCCTCGTAATGATGTAAAAGGCGATGCAAAAAGCATTGTGGCTCACTTGAAAACAGTACATGATACTCGATTGTACATATGCGATTTGTGTGGATTAGAATTTAAGAAGCGAACAGATCTTTCTGTTCACCTCGATGATCATGTAGCTAAGGAAGAAGGGGACTTTCAGTGTGAAAACTGCAACAGAATATTCAACAACTTACGACTTTTTAGAATACACAAACGAATTCACTACCCGCAAACTAAATCTTGGCCTTGCGAAGTTTGTGGCAAACGATACagTTCTAGGAATTTACTGGAAGagcacacaaacacacacaagGGAGTTCGACCATACATGTGCAAATGCGGAAAAGACTTTGCCTCGAAATATACGTATAAGGCGCACGTTAAAACACACGAATATCGTCCTCGTCCTTTCGAATGCTCTCATTGTAGCAAAACCTTTTTAAGTCAGCAGAATCTTAGTCAACATGAAAGAACTCATAATGGAATTAAAGAATACGTGTGCGATCAGTGTGGCAAAGCATTTGGATCACAACATAATTTAGAAGTGCACAATATAGTTCATACTGGTTACAAACCATACAATTGTAGAACTTGTGGCAAAGCTTTTGCCAGAAAAGCCGAAATTAGAGATCACGAGAGAACTCATACTGGTGAAAAGCCCTATCAATGTGAATATTGCGGAGCAACTTTCAGTCAAAGGTCCAATCTTCAATCTCACAAACGAGCGACGCATTACAACGATAAGAGGTATAAGTGTGATGATTGCGGAAAAGGATTTAAACGTCGTCGACTCCTGGATTATCACATTAAAGCAGCTCACACGGGAGAACGCCCCTACAAATGTGAAACTTGTACAGCGACATTCGTGTATCCTGAACACTTCAAGAAGCATATGCGCATTCATACGGGAGAGAAGCCCTTCCTGTGTGAAGTATGCGGTAAAGCTTTCAACAGCCGTGACAACCGAAATGCTCATCGCTTTATCCACAGTGACAAGAAACCTTATGAGTGTTTAGTTTGCGGTACAGGCTTCATGAGGAAACCTCTTTTATATGCTCACATGCAGACACAAgGACATCTTAATGACACAATTGTTGTCAACCAACCAAGATTGACAACAGAAGATGATCAAGTTATTACTGTCTCAGATGGCAATGTAGAATTGTTAATGGAAAATGCCGACACAGAACAGcTGACTGAAACTGGATTATATGTGACTGATCTAAAAAACCACGTCATCATACATCAAGATGGAAATCAAATATACCATGAAGGAAGTATGCTGAACATTCCTTCTGATGGTGAAATTAGTGGTGATCAAGTTCAACATCTTGTAGTGGATGGACAGTTGATTGAAAATAATGCGCATTCGCCAAAGGAAGAACATGAAGAGATCCTGGAAGACGACGACGAAGatgaagaaggagaagaagcgGATGTGGAGGAGTTATATAGTTATGAAGAAGAAAATCACAAAGAAACTATCGTCCTACCGGGAACTTCAAACTACAAGCAGATAATAGGAGACAGTAAAAATTCTGTTAGATTGGTGCAAATAAGAATTCCAACTTCTTCTGCTGGTGATGGGAGAAGCTGGTTGAACTTAGTACAAAGCACTTAA
Protein Sequence: MSTDTEKFYSNCFICNSKLSTRNTVQIFNEKSGSRSERPLAETVFSVLDIESDCNDPHSSVICRKCKKLFEEVDALESRISEIKGDIFNSYKQTQKVISESFLNDDELNDHDYLNALAMTNKEKTEIKKNTNVKKKFLETKKIIDSEEGNEDKEEDMIEIEKESSPVQDVSELVNSIQEGEEVIIKVESLDYLNNDLKKTVLKKPKTNLKEEQSQEQVVLREDSVYTCLLCPRNDVKGDAKSIVAHLKTVHDTRLYICDLCGLEFKKRTDLSVHLDDHVAKEEGDFQCENCNRIFNNLRLFRIHKRIHYPQTKSWPCEVCGKRYSSRNLLEEHTNTHKGVRPYMCKCGKDFASKYTYKAHVKTHEYRPRPFECSHCSKTFLSQQNLSQHERTHNGIKEYVCDQCGKAFGSQHNLEVHNIVHTGYKPYNCRTCGKAFARKAEIRDHERTHTGEKPYQCEYCGATFSQRSNLQSHKRATHYNDKRYKCDDCGKGFKRRRLLDYHIKAAHTGERPYKCETCTATFVYPEHFKKHMRIHTGEKPFLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGTGFMRKPLLYAHMQTQGHLNDTIVVNQPRLTTEDDQVITVSDGNVELLMENADTEQLTETGLYVTDLKNHVIIHQDGNQIYHEGSMLNIPSDGEISGDQVQHLVVDGQLIENNAHSPKEEHEEILEDDDEDEEGEEADVEELYSYEEENHKETIVLPGTSNYKQIIGDSKNSVRLVQIRIPTSSAGDGRSWLNLVQST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01392960;
90% Identity: iTF_00882383;
80% Identity: -