Ldro035002.1
Basic Information
- Insect
- Leptopilina drosophilae
- Gene Symbol
- -
- Assembly
- GCA_032873175.1
- Location
- CM065486.1:9053450-9075359[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0032 0.64 11.9 0.5 2 23 627 648 626 648 0.96 2 18 0.0012 0.25 13.2 4.6 1 23 653 675 653 675 0.97 3 18 2.8e-06 0.00057 21.5 3.7 1 23 682 704 682 704 0.99 4 18 6.2e-05 0.013 17.3 1.7 1 23 710 732 710 732 0.98 5 18 0.0022 0.45 12.4 2.1 2 23 738 759 737 759 0.98 6 18 0.0016 0.33 12.8 0.2 1 23 764 788 764 788 0.99 7 18 0.31 63 5.6 2.3 1 11 794 804 794 817 0.86 8 18 0.00013 0.026 16.3 1.2 1 23 823 845 823 845 0.97 9 18 3.3e-05 0.0068 18.1 3.6 1 23 851 873 851 873 0.98 10 18 0.00042 0.085 14.6 0.4 2 23 986 1007 985 1007 0.96 11 18 2.2e-05 0.0044 18.7 2.6 1 23 1012 1034 1012 1034 0.98 12 18 0.0022 0.44 12.4 3.6 1 23 1041 1063 1041 1063 0.98 13 18 2.6e-05 0.0053 18.4 2.1 1 23 1069 1091 1069 1091 0.98 14 18 0.0057 1.2 11.1 3.4 2 23 1097 1118 1096 1118 0.97 15 18 5.4e-05 0.011 17.5 0.4 1 23 1123 1147 1123 1147 0.98 16 18 0.12 25 6.9 2.0 1 20 1153 1172 1153 1176 0.85 17 18 5.8e-05 0.012 17.3 1.2 1 23 1182 1204 1182 1204 0.98 18 18 0.00055 0.11 14.3 2.0 1 23 1210 1232 1210 1232 0.97
Sequence Information
- Coding Sequence
- ATGGAGGTGACATTGAAACGCATAACTGAAGATGGTGATTTTGCCAatgaagttttatttttaaatcaagaaaaatCGTATTCATTTGGCCGAAAATCGGACAACGATGTTGTTTTATTTGCACCGACAGTATCGAAAAATCATTGTATCTTTCATCACAATTCAGATGGATTGTTCGTTGAAGTTTTACAGagctTGGCTGGCGTTGTTGTTAACGGACAAAAACATACAACCGGCGCGAAGATTCAGTTAGACAATTACGATCTCGTTTCTATTGgacctttaaataaatataaggtCGAAATAAagaAGAAAACTGTAAGCATTGAGGAAGAAATGAATTTCATGCCCGATTTTGAAACCGATATTGAAAGCATCAAAGAAGAGGAAACGGAATATGAAGACACGGAATTTGAATATGTAACAAGCGGTCTCGAGGACAATGACTACGAAGGagtagaaaaaaaagacGGAAAATCGAAAAACTTGGAAAAACGCAAAAAAATCGAGTCAAACAAGAAATTTCatgttaaaaaacgaaaaaaatcgTCGCCCGAGTCGGGAAATCGGGAGAAAATCGAGTTGGAAAACAAATTCGACTTGGAAAAATCGTCAATCGTGTCGGAAAGTGGAGAAAAAATCGAAACGGAAACCGGGGAAAAGCGAAACAAGTTTCCACTCGAATCGGACTATCGAGAGGAAATCGAATCGACAACGAAATTAAAAACCGAAGATCTACAAGAATCGGATAATcccgagaaaaattatttcaaattagaaaaatcggaaaaatctaaaatcgaattaaaagcaaaattaaaaatcggcAAACGTGAAAAATCGCAAAACGAGGGAGAAAATCGTGAGAAAATTGTGACGAGAAAAAAACCGAATATCGAGAATACACTTGAGTCGGAAAATCGCGAAAAAATCGATTCGCAAAATAATTTCGAAGCGGAAAAACGGGAAAAAATCGATAATCATGAAAAGTCGtcaaacaatttggaaagtcgaGAGAAAATAGAATCGCAAAGAAAACTAAAAGTCGATAATTGTGAAAAATCGGAAAATCCCGAGAAAATCgaagtggaaaataaattagaaaattcggagaaaaatgcaaaagtcgttaaaggaaaaaaatcacAAGAGTCGGAGAATCGTAAGAAAGTTGAATCGACAACGAAATTAAAAGtcgaaaatgttaaaaaatcgcaaaatgAATCGAAAAATGTAGTAGATAAAAATTTGGAATCCGATTTTTGCAGTAAACGTCTTATCGTCAGCTTGACggatattatgaaaataaaaaataattcgaagaCGAAAAGTGAtgttattgttaatttagtaaACGAACATTCGCCTTTAAAATCGATTCCAGTAAAAAAACCGTCGCCAggaacaaaaataaagaaacgtCGAGAAATTCCCGTCACTAGAAATTATctgttaacaaaatatttttcgttgACGAAAAAAGATGCTTCAAATGTTAGCGATGATGCTAAAAATTCTAGTGCTGATAATAAAGATGATAATAAAGATGTTgaagaagatgatgatgataataataataaagatgttGAAGAAGTTGATGAAGATGATGATGAAGATATTGAAGAAGATGTTGAAGAAGATGTTGAAGAAGATGTTGAAGAAGATGATGAAGATGATGAAGATTATGATGAAGATTATGATGAAGATTAtgatgaagatgatgataaagaTGATGATAAAGATGATACTGAAGAAGAGGAGGATAATAATGAGGACGAGGATGATAAGGATTACAATGCCAACGATGATATTGAAGATAATAATGATAACATCGAAGAACTGgtaaataaagcaaaaaaatctCCAACAGGAAAGCTGATATGTGCAAAatgttcaaaagaattgaaaggACGATCAGCACTACGACGGCATTTGTACACACATGGCGAGAAGAGATTTATTTGCTCAATTTGCAATAAACGTTTATCATCTAAATATTATCTACATGTTCATAAAAAGAAACACGTAAGTAATGAACGACGATTCAAGTGTAAGCAATGCGACAAGAGTTACTATTACAATAGTGAActaaataagcatttaaaatcaCACAGTCTTGAACGTAAATTTATTTGTGACACTTGCAAGCATACATTTAGAACAAAAGGCGACATTAGTGCACATATGAGAGTACATCAGCCAATTAAGGTGACATGTAAAGTATGTGGTAAAGTAATGAATACTAAacattcaatttattatcataTGCGAACACATGAAAACAATGAATACAAATGTACTGTTGCTGATTGTAGTAAGACTTTTATGCTGGAACAAGCACTGGAGCAGCATCTTATAACGCATCAGAATCTCAAGGAGCACAAGTGTCCGCATTGTGAGAAACGCTTTAATCTCATACAATGTAGAGATCGACATGTTGCATTTGTACACGAGAAGGTGGGACTGCATATTTGTCAATATTGTGATAAGGAATTCGAATTAAAAGCATTATTGGTGACGCACTTGAGGAGACACACTGGTGAACGTCCATTTACTTGTGAAatcTGCAAGAAAGGTTTCATCAGCAATACACAATTAAAGCATCACAGGAAATTGCATGTGGAAAAATTCACCTGCAACGATCTGCCGAATAATTCACCAAAATCGGTGAAAGATTCTTCATCATTGGCTGATAATAATTGGAATGGTGGTGATGATGCTGAAAATTGTGACACTAAGGATGGTGCTAATGATTTTAATGCTAAAGATTCAAATGCTAATGATTTTAATGCTAAAGATTCAAATGCTAATGTTGAAGTTGATACTGCAAAAGAAGTGGATAACGAAGAGAACAAGGACAATAAGGACTTCAATGCTAATAACAATATTATGAATAACGATGCTGACATCCAAGAACTAgtaaataaagcaaaaaaatctCCAACAGGAAAGCTGATTTGTCCAAAatgttcaaaagaattgaaaggACGATCAGCACTACGACGGCATTTGTACACACATGGCGAGAAGAGGTTCATTTGCTCAATTTGCCATAAACGTTTATCAACTAAAGACTATCTACGAGTTCATATAAATAAACACCTAATTAAAGAACGACCATTCAAGTGTAATAACTGCGACAAGAGTTACTTTACAAAcagggaattaaaatttcacttacAATCACACACTCTGGAACGTAAATTTATTTGCGACATTTGCAAGCATACATTTAAAACAAGAAATAATATCAGTGCACATATGAGAGTGCATCAACCAATTAAGGTGACATGTAAAATATGTGGTAAAGTAATGAATAATAAACATTCATATTTTTATCACACAAAAACACATAAGAACATTGAATACAAATGTACTGTTGTGGGTTGTAGTAAAACTTTTAAGCAAGAACAAGGACTAGAGCAGCATCTTATGTCACATGAGAATCTCAAGGAGCACAAGTGTCCATATTGCGAGAGACgttttaatattaagaaaagTAGAGATCGTCATGTTGGATTTATACACGAGAAGGTGGGAATGCATGTTTGTCAATATTGTGATAAGGGatttgtaataaaatcatttttggtAGCGCACTTGAGGAAACACACTGGTGAACGTCCATTTACTTGTGCGatCTGCAATAAAGGTTTCATCATCAATTCACACCTAAATTATCACAAGAAATTGCATGAGGAAAAATTCACCTGCAACGACAAATATCACATTAATGAGGCATTTAAGAAGGCACAAGGAGTCACGTAG
- Protein Sequence
- MEVTLKRITEDGDFANEVLFLNQEKSYSFGRKSDNDVVLFAPTVSKNHCIFHHNSDGLFVEVLQSLAGVVVNGQKHTTGAKIQLDNYDLVSIGPLNKYKVEIKKKTVSIEEEMNFMPDFETDIESIKEEETEYEDTEFEYVTSGLEDNDYEGVEKKDGKSKNLEKRKKIESNKKFHVKKRKKSSPESGNREKIELENKFDLEKSSIVSESGEKIETETGEKRNKFPLESDYREEIESTTKLKTEDLQESDNPEKNYFKLEKSEKSKIELKAKLKIGKREKSQNEGENREKIVTRKKPNIENTLESENREKIDSQNNFEAEKREKIDNHEKSSNNLESREKIESQRKLKVDNCEKSENPEKIEVENKLENSEKNAKVVKGKKSQESENRKKVESTTKLKVENVKKSQNESKNVVDKNLESDFCSKRLIVSLTDIMKIKNNSKTKSDVIVNLVNEHSPLKSIPVKKPSPGTKIKKRREIPVTRNYLLTKYFSLTKKDASNVSDDAKNSSADNKDDNKDVEEDDDDNNNKDVEEVDEDDDEDIEEDVEEDVEEDVEEDDEDDEDYDEDYDEDYDEDDDKDDDKDDTEEEEDNNEDEDDKDYNANDDIEDNNDNIEELVNKAKKSPTGKLICAKCSKELKGRSALRRHLYTHGEKRFICSICNKRLSSKYYLHVHKKKHVSNERRFKCKQCDKSYYYNSELNKHLKSHSLERKFICDTCKHTFRTKGDISAHMRVHQPIKVTCKVCGKVMNTKHSIYYHMRTHENNEYKCTVADCSKTFMLEQALEQHLITHQNLKEHKCPHCEKRFNLIQCRDRHVAFVHEKVGLHICQYCDKEFELKALLVTHLRRHTGERPFTCEICKKGFISNTQLKHHRKLHVEKFTCNDLPNNSPKSVKDSSSLADNNWNGGDDAENCDTKDGANDFNAKDSNANDFNAKDSNANVEVDTAKEVDNEENKDNKDFNANNNIMNNDADIQELVNKAKKSPTGKLICPKCSKELKGRSALRRHLYTHGEKRFICSICHKRLSTKDYLRVHINKHLIKERPFKCNNCDKSYFTNRELKFHLQSHTLERKFICDICKHTFKTRNNISAHMRVHQPIKVTCKICGKVMNNKHSYFYHTKTHKNIEYKCTVVGCSKTFKQEQGLEQHLMSHENLKEHKCPYCERRFNIKKSRDRHVGFIHEKVGMHVCQYCDKGFVIKSFLVAHLRKHTGERPFTCAICNKGFIINSHLNYHKKLHEEKFTCNDKYHINEAFKKAQGVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -