Ldro005307.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Leptopilina drosophilae
Gene Symbol
-
Assembly
GCA_032873175.1
Location
CM065478.1:76431939-76434187[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 2e-05 0.0042 18.8 2.1 1 23 223 245 223 245 0.98
2 15 0.0083 1.7 10.6 1.2 3 23 251 272 249 272 0.94
3 15 2.6e-05 0.0053 18.4 0.5 2 23 328 349 327 349 0.97
4 15 2.9e-06 0.00059 21.4 1.5 1 23 355 377 355 377 0.98
5 15 0.00045 0.092 14.5 0.6 2 23 384 405 383 405 0.95
6 15 2.2e-07 4.4e-05 25.0 0.5 1 23 424 446 424 446 0.97
7 15 4.6e-07 9.4e-05 24.0 1.3 1 23 452 474 452 474 0.98
8 15 9.4e-06 0.0019 19.8 1.0 1 23 480 502 480 502 0.98
9 15 0.0011 0.22 13.4 0.2 1 23 508 530 508 530 0.99
10 15 1.4e-05 0.0029 19.3 0.2 1 23 536 559 536 559 0.92
11 15 1.5e-05 0.0031 19.2 1.3 1 23 565 587 565 587 0.98
12 15 0.00033 0.067 15.0 4.7 1 23 593 615 593 615 0.98
13 15 3.3e-06 0.00068 21.3 0.2 1 23 621 644 621 644 0.96
14 15 3.4e-07 7e-05 24.4 1.0 1 23 650 672 650 672 0.98
15 15 1.2e-06 0.00024 22.7 4.2 1 23 678 700 678 700 0.99

Sequence Information

Coding Sequence
ATGTCCGAGGATATTTCGcactataaatatttatttgtttatgagGATAGAATATCAAGGTATGTTGTTTTGAAAGCTTTACGAAGTAACAATCCAAAGGAGGTGGCAATGAAGCTTTTGGACGTGATGACAATTATTGGTGTACCAGATATTTTACAGTCGGAAAATGGTCAAAATTATGTTAAAGAAGTTATAAGCGAATTACTGAATTTGTGGAATAGTTTCCGAATAATTCCCGATGATGTTATCCGATTAAAGAATGAGAGGAATTTTCCAACAATTATCAAGTCTTGGTTGacgaaaaatccaaaaaaatcatGGTTGGAAAGTATAAAAATCATACAAGTCTTGGAAAATGCAACATTTCCAACTGAGAGCAACAAATTTCCCTATGAATCACACTTCAAACGAAATGTTTACGAGGATTTCTATTACAACGATAGCAATGAAATCGAAACCGGAAAGTTGAAATCAGAGTTGGATATTCAAGCCGATAGTTTATCTATTTCAGACGACAATGATTTCGACAAAGAAATTAACACAGagTACACTGAAGAAACAAAAGTTTCGAATAGAAATCTCAGAAGCAATTTGCAAGGAATGAAAACTGAATCAGAAAATTCTAGTTCCGAAGAagaatcagttttaaaaaaaccaaaagatAAATTCACTTGTAAATTTTGTCCAAAACAATTTTCCATGGCTGGACATTTGGCAAATCATTTGAAATCGCACAAAAAGTCCATTGATTGTTTGAAGTGTTCAAAAAAGTTTCGAAGTCAAGTTGTTTATAAAAATCACCTACAGGAATTTCATGGAGAAATATCGCAAATTTCTACCGATTTTAAAGAGCTAGAAGAACCAAAAGAGAAATCTGTTTTCAACGAAATgagtaatttggaaaaaattcaaacaaaaccTCCGGTGAAAcgaaaaaaatccaaatatcgCGATAAACGAGTGAAATTAAACGAAACACTAGAATGCAGCTATTGTGAgcaaaaattcgaatttccgAGTGTATTAAAAAGACACATTCGTTCGCATACAAATGAACGACCTTACGTTTGCGAAATTTGCAATAAGAGTTTCAAACAACTCGGTCATCTCAGTCAACATTCAATAACTCACACCGACTACAAATCACTGCAATGCAATCAATGCGGTGTTAAATTCGAATCTCTCGACGCTTTAAAGCACCACTCGGAAATTCATCCCCACGACTCGTCGTTTCTCAAGAAAACTACCAATATCCCAAAAACTCGTCTCTTCGATTGTgatatttgcaaaaaagttttCTCCACCAAAAGCGTGTTGGAGAGGCACATATTGACACACACGCAAGAACGGCAATTCGAATGTGACGTTTGCGGTAAACGATTCAAACAATCAGGACACGTCAAGTCACACATGTTGGTTCACACCGGCGAACGTCGCTTCCAATGTGCAATTTGCTCGAAACGCTTCAGTTTggcaaattcgttaaaaaaacaCATGTACATACACAATGGCGATAAACCCTATCAATGCGACGTTTGTGGTGCAAGATTTCTCGAAAAGAGAAATCTCAACGGTCATCTATTAACGCACACAAATGAAAAACCCTTTGTCTGTAAAATATGTGGGAAAAAATACACTCTCGCCGATACTCTACGACGACACGTGAGTGCCGCCCACGAGGACGGACGAACTTATCAATGTGAAATTTgtgcaaaaatgtttaaacaattggcaCATTTGTCAGTGCATAAAAAAGTGCACACTGACGAGCGACCATTTCAATGTCATCtttgtgaaaagaattttaaacacAAGAATGTTTTGAAATCACATTTGGCCATTCACGCGAATGTTCGTCCTTTTGAGTGTGATGAATGTAAAGCGACTTTTGTTCGTAAAACAAACCTCCAAACGCATATCGCGTCGGCACACATGAATGAGAGGCCGTACACTTGTAATATTTGtgggaaaaaattcaaacaggTCAGTCATTTAAATGGTCATATTATTGTGCACAGCAATTCAATGCCATATCAGTGCGATTTCTGTGATCGAAGATGTAATCGATTGGATAATCTCAAGAAACACATGAGAATCCATACGAAAACTTCGAAAGAGCTTAATAGTGTAATTGTCGTCGCTGGCAGAGCGACAAATTTCAATACTCAAATTAATGTCTAA
Protein Sequence
MSEDISHYKYLFVYEDRISRYVVLKALRSNNPKEVAMKLLDVMTIIGVPDILQSENGQNYVKEVISELLNLWNSFRIIPDDVIRLKNERNFPTIIKSWLTKNPKKSWLESIKIIQVLENATFPTESNKFPYESHFKRNVYEDFYYNDSNEIETGKLKSELDIQADSLSISDDNDFDKEINTEYTEETKVSNRNLRSNLQGMKTESENSSSEEESVLKKPKDKFTCKFCPKQFSMAGHLANHLKSHKKSIDCLKCSKKFRSQVVYKNHLQEFHGEISQISTDFKELEEPKEKSVFNEMSNLEKIQTKPPVKRKKSKYRDKRVKLNETLECSYCEQKFEFPSVLKRHIRSHTNERPYVCEICNKSFKQLGHLSQHSITHTDYKSLQCNQCGVKFESLDALKHHSEIHPHDSSFLKKTTNIPKTRLFDCDICKKVFSTKSVLERHILTHTQERQFECDVCGKRFKQSGHVKSHMLVHTGERRFQCAICSKRFSLANSLKKHMYIHNGDKPYQCDVCGARFLEKRNLNGHLLTHTNEKPFVCKICGKKYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHTDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDECKATFVRKTNLQTHIASAHMNERPYTCNICGKKFKQVSHLNGHIIVHSNSMPYQCDFCDRRCNRLDNLKKHMRIHTKTSKELNSVIVVAGRATNFNTQINV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00882373; iTF_00880657;
90% Identity
iTF_00882373;
80% Identity
-