Basic Information

Insect: Leptopilina drosophilae
Gene Symbol: -
Assembly: GCA_032873175.1
Location: CM065483.1:4832702-4842360[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 28 0.0018 0.37 12.7 0.1 1 23 72 95 72 95 0.96

2 28 0.026 5.2 9.0 0.4 3 23 119 140 118 140 0.95

3 28 0.00017 0.035 15.9 3.8 1 23 146 168 146 168 0.98

4 28 0.0015 0.3 12.9 6.1 1 23 174 196 174 196 0.98

5 28 0.00019 0.039 15.7 0.6 1 23 202 224 202 224 0.97

6 28 0.0001 0.021 16.6 5.8 1 23 235 257 235 257 0.97

7 28 2.2e-06 0.00044 21.8 1.9 1 23 266 288 266 288 0.98

8 28 1.2e-05 0.0025 19.5 2.4 1 23 294 316 294 316 0.98

9 28 4.3e-06 0.00088 20.9 2.9 1 23 322 344 322 344 0.98

10 28 8.2e-07 0.00017 23.2 1.2 1 23 350 372 350 372 0.98

11 28 7.9 1.6e+03 1.2 0.8 3 11 450 458 449 470 0.86

12 28 0.0035 0.71 11.7 0.7 1 23 485 507 485 507 0.94

13 28 0.0014 0.29 13.0 0.7 2 21 524 543 523 544 0.95

14 28 5.7e-05 0.012 17.4 0.8 2 23 553 574 552 574 0.97

15 28 0.28 58 5.7 0.2 2 23 579 600 578 600 0.95

16 28 0.0073 1.5 10.7 3.1 3 23 608 629 607 629 0.92

17 28 5.2e-05 0.011 17.5 0.5 1 23 638 661 638 661 0.96

18 28 0.22 44 6.1 0.4 2 23 701 721 700 721 0.95

19 28 0.12 25 6.9 0.4 1 14 727 740 727 743 0.90

20 28 3.4e-05 0.007 18.1 0.5 2 23 799 821 798 821 0.95

21 28 9.8e-06 0.002 19.8 4.4 1 23 827 849 827 849 0.97

22 28 1.2 2.5e+02 3.7 0.2 1 23 853 875 853 875 0.88

23 28 2.6e-05 0.0054 18.4 1.1 3 23 883 903 881 903 0.97

24 28 5.3e-05 0.011 17.5 1.4 1 23 909 931 909 931 0.95

25 28 0.2 41 6.2 2.5 1 23 937 959 937 959 0.97

26 28 3.7e-05 0.0075 18.0 0.5 2 23 966 987 965 987 0.97

27 28 5.7e-07 0.00012 23.7 0.6 1 23 993 1015 993 1015 0.98

28 28 1e-07 2.1e-05 26.0 1.9 1 23 1021 1043 1021 1043 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	28	0.0018	0.37	12.7	0.1	1	23	72	95	72	95	0.96
2	28	0.026	5.2	9.0	0.4	3	23	119	140	118	140	0.95
3	28	0.00017	0.035	15.9	3.8	1	23	146	168	146	168	0.98
4	28	0.0015	0.3	12.9	6.1	1	23	174	196	174	196	0.98
5	28	0.00019	0.039	15.7	0.6	1	23	202	224	202	224	0.97
6	28	0.0001	0.021	16.6	5.8	1	23	235	257	235	257	0.97
7	28	2.2e-06	0.00044	21.8	1.9	1	23	266	288	266	288	0.98
8	28	1.2e-05	0.0025	19.5	2.4	1	23	294	316	294	316	0.98
9	28	4.3e-06	0.00088	20.9	2.9	1	23	322	344	322	344	0.98
10	28	8.2e-07	0.00017	23.2	1.2	1	23	350	372	350	372	0.98
11	28	7.9	1.6e+03	1.2	0.8	3	11	450	458	449	470	0.86
12	28	0.0035	0.71	11.7	0.7	1	23	485	507	485	507	0.94
13	28	0.0014	0.29	13.0	0.7	2	21	524	543	523	544	0.95
14	28	5.7e-05	0.012	17.4	0.8	2	23	553	574	552	574	0.97
15	28	0.28	58	5.7	0.2	2	23	579	600	578	600	0.95
16	28	0.0073	1.5	10.7	3.1	3	23	608	629	607	629	0.92
17	28	5.2e-05	0.011	17.5	0.5	1	23	638	661	638	661	0.96
18	28	0.22	44	6.1	0.4	2	23	701	721	700	721	0.95
19	28	0.12	25	6.9	0.4	1	14	727	740	727	743	0.90
20	28	3.4e-05	0.007	18.1	0.5	2	23	799	821	798	821	0.95
21	28	9.8e-06	0.002	19.8	4.4	1	23	827	849	827	849	0.97
22	28	1.2	2.5e+02	3.7	0.2	1	23	853	875	853	875	0.88
23	28	2.6e-05	0.0054	18.4	1.1	3	23	883	903	881	903	0.97
24	28	5.3e-05	0.011	17.5	1.4	1	23	909	931	909	931	0.95
25	28	0.2	41	6.2	2.5	1	23	937	959	937	959	0.97
26	28	3.7e-05	0.0075	18.0	0.5	2	23	966	987	965	987	0.97
27	28	5.7e-07	0.00012	23.7	0.6	1	23	993	1015	993	1015	0.98
28	28	1e-07	2.1e-05	26.0	1.9	1	23	1021	1043	1021	1043	0.99

Sequence Information

Coding Sequence: ATGGATTCTTTGGGGAATATTTATAGAATCAATCAACTTCAAATTTTCTCTCTCAGAAGATACTATGTATCAAATCTCGACATGCTGCCACCGAAAAATGATGATTGCGATAACATAAATATCGTTTATACGACAACCGATGTCACCGGGATAATCCTCACCGACGATCTGAAAATCAACTCAAATGGTGAAATTTTGGTGACCGAGGCAATCTATCAGTGCATTCATTGTGGAATTATATTTGTTGTCGAAGACGAGCTCAAGTTACATATGAAAGAAGCTCACGATATTCATGAGGAGAAAATTATTTACGAGGACGACGATGCTATTATACTCGGGGAAAATATTGTTGCGTGTACTTTTTGTCAAGAGCAATTCCCTGATCTCTTATTACTCGAGAAACATCAGCAGCAATTTCACAGTGATTTAAAATTGTACTATTGCGATAATTGCGATTACAGTTCATCACATCGACAAAATCTCATTAGCCATCAAAAGCGTCACAATACGGAGTATAAGTTTCATTGTGAAATTTGTGACTCTTGCTTTTACACAAAGAGCACATTTCAAGAACATCTACAGTCACATTCAAAGGAGAAACCCTTTCAATGTGACATTTGTAATGCAACATTCCGCTATCGTCAGGGCTTGAGATTGCACGCGAAACTCCATCAGCCGGACTACATTCCACCGCAAAAGAAACATCATTGCTCATTGTGTAATAAGCGATTTTCGAGGAAACAAGTTTTATTGGTGCATATGCGAACACATGGTAATATGGGGCCACAAAATGAATATATCTGTCATATTTGCGGTAAATCGTTGTCGAGTAAAACCTATCTCACGGTTCATGTGAGAAAGCACACTGGTGAGAAGCCACATGTTTGTGATCTCTGTCAAAAGGCATTCACGTCGCAAAATTATCTCAGTGTTCATCGACGAACTCACACTGGCGAACGGCCGCATAAATGTACGCAGTGCGATAAAAGTTTCACCCAGAGGACAACGCTTGTTGTTCATTTGCGAGGACACACGGGCGATCGACCATATCCCTGTTCATATTGTGAAAAATCATTCGCCTCAAAGACAATGTTGAATTCACATTTGAAAACACACGCCAAGCAGAGTGCGCGACAACAACAAACGTCGCAATCGGAAAAAGTGAAATTGGAACCCAGTATTATTCTCGATCGACCGATAAAGAAACAATCGAGTAGAAAACGAATTCCAGTTGCAAAACGAACCAGAGctcaaatgaaaataatggaaaactCAGCGGCAAGTgaaaatgatgatgatgatgatgatgaaagtTCCGAGTATGAGGTTGGGGAGAAAAATAGTTTATGCAATATTTGTGATGAGGAATTCACTTGCGCTAAAGTACCAGAAAAACATTGGAAATCCCATGAGGCAACATTTTTTCCAAACGGTGTCGATAAACCCGGATTTTTTGAGTGCGATCAATGCGACATGAAATTTCCCAAACGATTTCAACTCGGTAAACACAGAGTTGCGCATAAATTGAATATCACCGAATTTCCAGAGCCAATAAAACGATTTCAAAAGCGCTGTAATCTTTGTCGTAAACGCTTTCGATCACCATTGTCCTACGAAAAGCACATGTTGGAACCAAATCCCGATCATCAGAACGTCGAGTGtgatatttgcaaaaaaatgtacaGATCAAAAAGAACATTGATAATGCACATTAAGCAGCATGAGGAGAAATTAATTTGTCACATTTGCGGCGCTACGAGAGCCACAATTGCTTCAATGGGCATGCACATAAAACGTCACAATAAAGAATATCAAGTGTTTTGCGATCTTTGTAATAAGGGATTTTACCATAAGGCCGAACTTCGTCTACATTTATTTCACGGCCACACCGATAGGCAAGCAATTCGTCCCTTCATCTGTCAATATTGCGGCAATACTTATCGCTCCTCcgactatttaaaaatacacgTGAATTCCGTTCATCTCAATGCCAATGAATATAAACGTAAACGCTATAAATGTGAATTGTGCAATTTCGACACTCATCTACTCAAGTGCTTGACGAATCACAAGAAAATGCACACCGGCGAAAATCTCATTCCCTGCAAATATTGCGACAAATTAATCAACAAAACCTACATGACAATTCACGTGCGTTCCCACACGGGCGAACGACCATTTACTTGCACTTTTTGCAACAGATCTTATTCGTCCGCGGACGATGCTGAGGATGagacaattgaattatttcccaATTGCAGTTTCGATTCTACAGACGGGATGCAAAGGAATTTCAccgaaaaattggaaaattctcGAACAGAAATAATCGAGGATGAAATGATTTTccgaagagaagaagaagaagaagaagaagaagaaaatacgAGGACAAGCTGTGAGGATTGTAATCAAACATTCGCCAATGAGGAAAAATTACGCAAACATCAAATAAAAGCTCATCAAATCGAAAAACCCCATCAATGTAATTCCTGTGGGAAATCATTCAAGACTGCCGAGTATTTAAAAACACATCGTAAGCAACACAATAAGCGTTTCGTTTGCGACATTTGTGGAATATTGAAAGTCTCCGGCTACGATTTACGTCTTCACAAAAAGAAACACTACAAGGAATACCTAACATTCTGTGATATTTGCAAAAAGGGATTTTACACGAGTCAAACGTTAGAGAGGCATTTATTGACGCACACCGGGGAGAAGCCGTTTTTGTGCGATATTTGTCACACGTCATATGCGAGTGCAACTTATTTGAAGATCCACATGAAATCGCATGGCGAACGTGAGAAGCATAAATGTAATATTTGCGATTTCGAGAGTCATTGGAAGGCTGCGTTGAAGGTGCATTTAAAAACGCATACGGGCGAAAATCAGATAAAATGTAAGATTTGCGATAAACTAGTGTCGAGTAAGAATTATCTTCAGAGTCATATTCGTATTCATTCCGGCGAGAAACCTCATGTTTGTGAAATTTGCGGCAAAGCGTTTAGCgtgagaaaatatttaattgtccaTCTTAGAACGCACACTGGCGAGAGGCCGTATGAATGTAAAATTTGTCAGAAACGATTCACACAACAGGGCTCATTAAATTCGCACATGAAATCACATCAAGAGCGTAAATGa
Protein Sequence: MDSLGNIYRINQLQIFSLRRYYVSNLDMLPPKNDDCDNINIVYTTTDVTGIILTDDLKINSNGEILVTEAIYQCIHCGIIFVVEDELKLHMKEAHDIHEEKIIYEDDDAIILGENIVACTFCQEQFPDLLLLEKHQQQFHSDLKLYYCDNCDYSSSHRQNLISHQKRHNTEYKFHCEICDSCFYTKSTFQEHLQSHSKEKPFQCDICNATFRYRQGLRLHAKLHQPDYIPPQKKHHCSLCNKRFSRKQVLLVHMRTHGNMGPQNEYICHICGKSLSSKTYLTVHVRKHTGEKPHVCDLCQKAFTSQNYLSVHRRTHTGERPHKCTQCDKSFTQRTTLVVHLRGHTGDRPYPCSYCEKSFASKTMLNSHLKTHAKQSARQQQTSQSEKVKLEPSIILDRPIKKQSSRKRIPVAKRTRAQMKIMENSAASENDDDDDDESSEYEVGEKNSLCNICDEEFTCAKVPEKHWKSHEATFFPNGVDKPGFFECDQCDMKFPKRFQLGKHRVAHKLNITEFPEPIKRFQKRCNLCRKRFRSPLSYEKHMLEPNPDHQNVECDICKKMYRSKRTLIMHIKQHEEKLICHICGATRATIASMGMHIKRHNKEYQVFCDLCNKGFYHKAELRLHLFHGHTDRQAIRPFICQYCGNTYRSSDYLKIHVNSVHLNANEYKRKRYKCELCNFDTHLLKCLTNHKKMHTGENLIPCKYCDKLINKTYMTIHVRSHTGERPFTCTFCNRSYSSADDAEDETIELFPNCSFDSTDGMQRNFTEKLENSRTEIIEDEMIFRREEEEEEEEENTRTSCEDCNQTFANEEKLRKHQIKAHQIEKPHQCNSCGKSFKTAEYLKTHRKQHNKRFVCDICGILKVSGYDLRLHKKKHYKEYLTFCDICKKGFYTSQTLERHLLTHTGEKPFLCDICHTSYASATYLKIHMKSHGEREKHKCNICDFESHWKAALKVHLKTHTGENQIKCKICDKLVSSKNYLQSHIRIHSGEKPHVCEICGKAFSVRKYLIVHLRTHTGERPYECKICQKRFTQQGSLNSHMKSHQERK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -