Basic Information

Insect: Leptopilina drosophilae
Gene Symbol: -
Assembly: GCA_032873175.1
Location: CM065485.1:34015667-34020033[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 1.3e-06 0.0024 18.8 0.1 2 42 197 237 196 240 0.87

2 5 3.2e-09 5.9e-06 27.2 0.0 5 42 250 287 247 290 0.86

3 5 0.0019 3.5 8.7 0.0 19 33 315 329 302 334 0.77

4 5 4.9 9.1e+03 -2.2 0.0 31 45 344 359 344 359 0.85

5 5 8.7e-12 1.6e-08 35.4 0.0 5 41 362 398 361 400 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	1.3e-06	0.0024	18.8	0.1	2	42	197	237	196	240	0.87
2	5	3.2e-09	5.9e-06	27.2	0.0	5	42	250	287	247	290	0.86
3	5	0.0019	3.5	8.7	0.0	19	33	315	329	302	334	0.77
4	5	4.9	9.1e+03	-2.2	0.0	31	45	344	359	344	359	0.85
5	5	8.7e-12	1.6e-08	35.4	0.0	5	41	362	398	361	400	0.93

Sequence Information

Coding Sequence: ATGTCAGAGGTCAACAATCAAATTCAAGTTATTGAAAGAACTTGTCTACAATGGGAAGATTATCAAAATCAATTCTCAGGTGTTGTTCGACAACTTCTAGACGAAAATTGCATGGTGGATGTTACACTATGTGTATCAGGACAACGCATTCTTGCACATCGCATCGTTCTTTGTGCTTTCAGCACTTTCTTCAAAGATTTGTTGAGTCAGGTGACTGACGATCATCCAGTTATTATATTAACCGGAGTGGCACCTGAATGTGTTAAAGGAATTATTGAGTTTATTTATCAAGGGGAAGCATATTTTCCCGCAgatagtataaaaaatattttggataCTGCATTTTATCTGAAAATTGCTGGATTAATGGAgtACAAAATCAGTGAGACAGTTTCGAAATTGAAGGAGGATGCGGAAGAAATTGAAATATCGGATacgaatttaaatgaaatggaGGAGGAGGAGGTTTTGGATGTTTTTGAGCATGTTTATGAGGAGGCGAATGATCAATCGGAACAGAGTGCAACTGAGGAAAATtctgaaagtaaaaaaagaaaacgacgTTATTCAATGAAACGGGAATACAGTGAAGATATGCTCGCTGCGGCGATTAATAATTTACGTGAGGGACAAACATTAATTGAAGCTGCTACTAAAAATCATATTCCTCGTTCTACTCTCTACATGCGAGCAAAAGCCTTAGGAATTCAATTGCAAGCTTGCAGAAATGAATATCCCGCTGAGTGTATGAAAGGAGCAATTGACGCCGTCATCGgagGATCGAGTTTGCAGACTGCTTCGGAAATGTTCGGTATTCCAAAAACAGTTCTTTGGCGACGAATGCAAAAGGAGGGTTATCAAGTTTTTCGTCCGGAATTGAAAAGAAGTTATGGTTCGGATAAAAGAGAGGCGGCGGTAAAAGCATTAGAAAGAGGGGAAAATTTATCGAAAGTGGCGCAAGAATATCaaataCCAAAGACAACGTTGTTCAGGGACAAGACAAAATTAATTGATCAAGGTAAGTTACCAACGTCGTTTTGGAAGAAGAGAAAAACAGAAAACGAAGCCGTTAAACAATTTCGCCTCGAGGAAGCAGTGGCTGCGTGTAAAAGTGGAAAAATGTCACAAGCCGCCGCATCAGTTTGTTATCGAATTCCAAAAACAACGATATGGAGGCGATTGCAGCAGgacaattcaaaaattaagcGGAAAACTAAATCAACCGGTGCAATTAATGCATCCGCTAACACAATTGACGCTAATGAATTCACATTTTGTGAAGTAACGTCAGGAATTCCAATCACGTACATTGACGAGAATAGTATTCCCGAAGACTCCGTTATTATTCTCACGACAGAGGATGTCGACGAATTGAGTTTGGAAAATCGGGCACAAATTATTGTCAACTCGaacgtgaatgaagaatttatttcaaattcggAAGCGGAGCCCACCTTCACTATTTCGAAGAGTTAG
Protein Sequence: MSEVNNQIQVIERTCLQWEDYQNQFSGVVRQLLDENCMVDVTLCVSGQRILAHRIVLCAFSTFFKDLLSQVTDDHPVIILTGVAPECVKGIIEFIYQGEAYFPADSIKNILDTAFYLKIAGLMEYKISETVSKLKEDAEEIEISDTNLNEMEEEEVLDVFEHVYEEANDQSEQSATEENSESKKRKRRYSMKREYSEDMLAAAINNLREGQTLIEAATKNHIPRSTLYMRAKALGIQLQACRNEYPAECMKGAIDAVIGGSSLQTASEMFGIPKTVLWRRMQKEGYQVFRPELKRSYGSDKREAAVKALERGENLSKVAQEYQIPKTTLFRDKTKLIDQGKLPTSFWKKRKTENEAVKQFRLEEAVAACKSGKMSQAAASVCYRIPKTTIWRRLQQDNSKIKRKTKSTGAINASANTIDANEFTFCEVTSGIPITYIDENSIPEDSVIILTTEDVDELSLENRAQIIVNSNVNEEFISNSEAEPTFTISKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00879877;
90% Identity: iTF_00882861;
80% Identity: iTF_00881422;