Lcla007646.1
Basic Information
- Insect
- Leptopilina clavipes
- Gene Symbol
- lola
- Assembly
- GCA_001855655.1
- Location
- JUFY01034462.1:362528-366897[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.01 1.1 10.4 0.5 1 21 32 52 32 53 0.94 2 15 0.53 55 5.0 6.3 1 23 61 83 61 84 0.95 3 15 0.0058 0.6 11.2 4.2 1 21 102 122 102 123 0.96 4 15 0.76 78 4.6 5.2 1 23 131 154 131 154 0.97 5 15 0.011 1.1 10.4 1.6 1 19 205 223 205 226 0.93 6 15 0.0016 0.16 13.0 2.3 1 23 234 257 234 257 0.97 7 15 0.0074 0.77 10.9 0.0 3 21 410 429 408 430 0.94 8 15 0.074 7.6 7.7 2.8 1 23 443 465 443 466 0.96 9 15 0.00059 0.061 14.3 0.6 1 22 509 531 509 531 0.95 10 15 0.0099 1 10.5 1.0 1 23 539 562 539 562 0.94 11 15 0.0011 0.11 13.5 1.7 1 21 616 637 616 638 0.97 12 15 0.058 6 8.1 4.9 1 23 645 668 645 668 0.95 13 15 0.0015 0.16 13.0 4.4 1 23 727 750 727 750 0.96 14 15 0.66 68 4.7 0.3 1 21 825 846 825 847 0.94 15 15 1.1 1.1e+02 4.1 2.2 2 23 856 878 855 878 0.94
Sequence Information
- Coding Sequence
- atgtatgcattTAATGTTAAGTATTACGCAATTGATCAGCAAGCGCAATTAATTCCATGTTATCCTGTTCGTTTTCCtggagagaataaaaaatatccctGCTTACGATGCAGCAGTTCATTTACAAGAAAAAGTGGACTCATATACCATGAAAGATACGAATGCATGCAATCGCCTCGATTTTCGTGTCCTTATTGTTTTTACAAAGCACGACACGTTTCGAATGCTCGCAGACATGTTCATATGCATCATTTCGAAGAAAGTTATTTCTTCGTTCCACATGAACTGTcagtaaagaagaaatttcgtTGTCAAAATTGTCCCAGTtcatttaaacataaaaaatacctGACctatcatttaaaatatgaatgtAATCGTGGTCCGAGATTTTGCTGTCCCTATTGTGATCACAAGGCAAGATTTTCAAGTGGTTCTCGTTCACACATCAGAACCAAACATCCTggacttgaaatttatacaatCGATTTGTTTAAACCTAGAATTAAATttttagaaaTGGAATTGACTCCACTAACGGAGTTGCAAACCGGAAGAGCATGGAGTCAACGAGACACCGCCAATATGGCTTTTCAGGGTGatagaataattttcccaTGTCCTAATTGTCCTAGTacgtttaaatataaaaacaatttatattatcaTTCGAAATTTGAATGTGGTATGGAGCCGAGATTTAATTGTCCGTATTGCGTTTACCGTACAAAGCATGTTTCAAATGTTCGTGCGCATATTCGCAGGAAGCATCCCGAAGATGCTGAAAACATCAAAGTCGTTGAAGATGAAAAGGAAGAGGGCTTTCAAACTACCGAAGCGTCTTCAACGCCAAAAACTTTTCGTGGAAAGAATAATTGGATTACTTCGAATATTATGCTAAGTTCCAAAATACCGACTCTGAATATTTCTCGAATATCGACTGTTTATAAACATTCCAATAATCCAAATACAGAAAATCCCTCCGCAGAATTCGCGAAAGAAGATCAAAGTCTCGTGAGTTCTGAAgttgaagaaattaaagacACCGATGAAATAAAGGACAACGACAGTGAAATAGATGCGAGCAatgattttgataattatgtCGATGTTGGTGCTATTTCAGATGACGAGATCATTCCCGAAAGTCAAGAAGACGTTCTGTCTGTTATTGAACCTGTAAAAGGTATCACAATTAGTGAAACTACATTAGAGAGACGACTAGCATGTCCCAATGTTTGTGGCAATTTCTTTTACGTGAAAGCCGCTCTCCAGAAGCACATTCGCTACGACTGTGGAAGAGTTTATCCCCGACATAATTTCCGATACAAGTGTGCTTATTGCGATTCTCGTTCGGAGTACAGTTACAGTATTATGCGACACATCAGCAAACATCATCGAATGCAAAAAGTCCATGTCATTGACACTTGGCTTAAGAAAATTCTCGAGAAGAAGGAGTCACCAAAAAAGATACGCGATCCAAACGATCCGACAGAATCCACCGAAGTGGAAAGTATCAAGAGGCACGAGTGTCCCAACAAATGTGGAATATCCTTCGACCACGTTTCGAATATTAGTCGCCACATTCGCAAAACTTGCACCAAAGTGCAACGATACCTCTGTCCCTATTGCAAATACAGAACGAGAACCTATAATCTAATAAAGAAACACATCGAAGTGAATCACAAACTCAGCAAAGTGTGCGCAATCAACGTCTTTACGAAGCAACTTGTCTACAAAGAAATACGTCGCCGGATCAAAGTTGCCGGAAAGAAGAATCCAAACGATCCGTCATCATCCACTCCAGATGAAGAAACCACCGAGGGAAAGAAGTCCAATAAAAGATTTCAATGTCCCAATCAATGTGGAATGACCTTCAATTTTCAACACACAATGGAGAATCATCAGCGTTTCGTGTGTGGAAAAATGCGCTACAAGTGTCCTTACTGTTCGAAAAAATGCCGACAAGAATGGGGTACCGTTACACACATAAAGCACCGACATCCCGAAAGAAAAGCATTCGTCATCGATTTCCGACGAAAGCAAGTCATCTACGAAATTGCCGGCAGCAAATACTCCGATGACTTTGATTCAATTCAGGACAAAAGTATTCGCGAAGAGTTCGAGAAGGAGAAAGCCGATTCCTCAACAGTGCGACCAAAGAAAGAGAACACCACCTACAAGTGTCCCTTCTGCGGTAAAATGTGCAAACACGGTTGGAATTTGGATCAACATATAAAATTCCGTCATCCAAATGTCGTGAGTCAATCGTCACGAAATTTGCCCGCCTATCAACCGGcgaagaaagagaaagaaatcCAAGAAACTGTTGAGGAATCATCATCCCAAATTGAAACATCTTTCGACGAAAGTGCTACATTTTCGGAAAATACAAGTCAAGCCGAGTCTATGAATCTAGAGGAAGAGTCGAAAGTTGACAGTTCTTCCAAGACTTCGAAACAAAGACGAAATTTTTACTGTCCAAATAATTGCGGTAGTCTTATCAAATACGAAAACAATTTGTCGAGACATCTCCGTAATGTTTGCGGAAAGCACAAGTCCCTCGAATGTCCCTTCTGTACTTTTCGATCAAAGAATAATATTGTCATGAATAAGCACATTAAACATTCTCATGCAAGGGAGGAAAATTTCGTACTGGTCGGTGATGAGAACAAAGAACACAGTGACTTTAATGTTAATCAGGTTAATGTTAAGGTCgaggaaattgaaattgataatCCTTTAGagtaa
- Protein Sequence
- MYAFNVKYYAIDQQAQLIPCYPVRFPGENKKYPCLRCSSSFTRKSGLIYHERYECMQSPRFSCPYCFYKARHVSNARRHVHMHHFEESYFFVPHELSVKKKFRCQNCPSSFKHKKYLTYHLKYECNRGPRFCCPYCDHKARFSSGSRSHIRTKHPGLEIYTIDLFKPRIKFLEMELTPLTELQTGRAWSQRDTANMAFQGDRIIFPCPNCPSTFKYKNNLYYHSKFECGMEPRFNCPYCVYRTKHVSNVRAHIRRKHPEDAENIKVVEDEKEEGFQTTEASSTPKTFRGKNNWITSNIMLSSKIPTLNISRISTVYKHSNNPNTENPSAEFAKEDQSLVSSEVEEIKDTDEIKDNDSEIDASNDFDNYVDVGAISDDEIIPESQEDVLSVIEPVKGITISETTLERRLACPNVCGNFFYVKAALQKHIRYDCGRVYPRHNFRYKCAYCDSRSEYSYSIMRHISKHHRMQKVHVIDTWLKKILEKKESPKKIRDPNDPTESTEVESIKRHECPNKCGISFDHVSNISRHIRKTCTKVQRYLCPYCKYRTRTYNLIKKHIEVNHKLSKVCAINVFTKQLVYKEIRRRIKVAGKKNPNDPSSSTPDEETTEGKKSNKRFQCPNQCGMTFNFQHTMENHQRFVCGKMRYKCPYCSKKCRQEWGTVTHIKHRHPERKAFVIDFRRKQVIYEIAGSKYSDDFDSIQDKSIREEFEKEKADSSTVRPKKENTTYKCPFCGKMCKHGWNLDQHIKFRHPNVVSQSSRNLPAYQPAKKEKEIQETVEESSSQIETSFDESATFSENTSQAESMNLEEESKVDSSSKTSKQRRNFYCPNNCGSLIKYENNLSRHLRNVCGKHKSLECPFCTFRSKNNIVMNKHIKHSHAREENFVLVGDENKEHSDFNVNQVNVKVEEIEIDNPLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -