Basic Information

Insect: Leptopilina clavipes
Gene Symbol: -
Assembly: GCA_001855655.1
Location: JUFY01034462.1:320113-331347[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.39 40 5.5 0.4 1 10 59 68 59 71 0.91

2 14 0.00033 0.034 15.1 1.3 1 20 152 171 152 173 0.95

3 14 0.0059 0.61 11.2 1.1 1 21 198 218 198 219 0.95

4 14 0.091 9.4 7.4 0.3 1 21 303 323 303 324 0.93

5 14 0.67 70 4.7 0.8 1 20 357 376 357 378 0.94

6 14 1.3 1.3e+02 3.9 1.4 1 20 422 441 422 441 0.96

7 14 0.012 1.2 10.2 0.9 1 21 517 537 517 538 0.95

8 14 9.6e-05 0.0099 16.8 3.6 1 21 547 567 547 568 0.97

9 14 0.87 90 4.4 0.4 1 21 601 621 601 622 0.93

10 14 9.4e-05 0.0097 16.8 1.7 2 21 785 804 784 805 0.94

11 14 0.00017 0.017 16.1 0.3 1 22 871 892 871 892 0.96

12 14 0.00054 0.056 14.4 6.6 1 23 901 923 901 924 0.95

13 14 0.00049 0.051 14.6 1.3 1 21 1001 1021 1001 1022 0.95

14 14 4.1e-06 0.00042 21.1 5.5 1 23 1030 1052 1030 1052 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.39	40	5.5	0.4	1	10	59	68	59	71	0.91
2	14	0.00033	0.034	15.1	1.3	1	20	152	171	152	173	0.95
3	14	0.0059	0.61	11.2	1.1	1	21	198	218	198	219	0.95
4	14	0.091	9.4	7.4	0.3	1	21	303	323	303	324	0.93
5	14	0.67	70	4.7	0.8	1	20	357	376	357	378	0.94
6	14	1.3	1.3e+02	3.9	1.4	1	20	422	441	422	441	0.96
7	14	0.012	1.2	10.2	0.9	1	21	517	537	517	538	0.95
8	14	9.6e-05	0.0099	16.8	3.6	1	21	547	567	547	568	0.97
9	14	0.87	90	4.4	0.4	1	21	601	621	601	622	0.93
10	14	9.4e-05	0.0097	16.8	1.7	2	21	785	804	784	805	0.94
11	14	0.00017	0.017	16.1	0.3	1	22	871	892	871	892	0.96
12	14	0.00054	0.056	14.4	6.6	1	23	901	923	901	924	0.95
13	14	0.00049	0.051	14.6	1.3	1	21	1001	1021	1001	1022	0.95
14	14	4.1e-06	0.00042	21.1	5.5	1	23	1030	1052	1030	1052	0.99

Sequence Information

Coding Sequence: aTGCTTTTCGATTTTGgaatTCTGCAAAGTATATTGACTCAAAGGACTGGAAATTTTAGAGAGGAAGAAGAACAATCTTGGAGTACAAACAGTGAAGAAGAACATTATTTTCCCTATGAATTATCATCACCTAATCAAACAGAATATCAAAATTTGCCAAAAACATCTAAGCCCTTTCGTTGTCCAATATGCACCAGACGATTTGATGGAAACTTGACGTGGTCTGAAACAGAGTGCTTAAACAATAATCCACATCAAGGACACGAGGAAGAATGGATGCCACCTAATCAAGATCCCGGAATTTCAAAGACTTCTAATTATGTGCCAAATACATTCACTTGTGATTTATGTGatttcgaaaattttgaattgttttccGACTGGAACTTTCCGGCCGGAGCTCTAGAACCACTGACAGAAGTATTGACTGGTGATGAAGaagatgaaaattgttttgaatgtaGTCGCTGTAATAAGGCCTATAAAACACTAAAGAGCCTAAGACGTCATCGATTTCATTGTGGACGTACATTCGATCCATTGGTCCGTGGATTTGTACAAAATTACGACGAAAATGATGATCAAGCTCAATTTCAGTGTGTTTATTGCAACAGAGCTTATCGCTGGAAGAAGGGCCTGAAACGTCATCAACAAcgttgtgaaataaaaatggctCAGGAAGTTTCATCAGGGAACAATCGTGAAGTGGATATTATTGAGGAGAGTAATGATGGACATATAGAGGAGCCTGAAGTCGATATCActggtgatgatgatgaagaaaTTGACATTATTGACAACACAACTCCAAGAGATGACTCTCAAAGCACTGTGGACCAAATCGCGAATCAAAGTCGTAAATCAACTTCAGTGGTAATTAGAAATCGAGACGCTACTGTAGGACGTTTTCAATGTATCTTGTGCGGCAAGAAATACGGTTGGTTGAAGAATTTGCGACGTCATCAAAGAATCTGTCGGAAGAAAGCGAATAAACATCGTTGGAAAGAATGCAAAGTGATGATCGAGCCTTTAACATTAAAGTCATCAAAGCGTATTgctgaacaaaattttaaatgtgcaAATTGCTTTGAGCAATTTAAATGGTTGAGAGATTTGAGACAACATCAATCGAATTGTATGAAGAAAGCACAAAATCTTTGGAATGTCAGTGAAGCTAATAAATCATCTAAAAATCCaccaaattttcaagaaagacAGGGTCACTCTAGAGAAATTTCCAATCACACGGATCAAGATCCATGCTACAAATGTGCTTTCTGCTTGAAAGAGTACAAATGGCGAAGAAGTCTCAGACGTCATTATCCAAAATGCACTGAAAGAGGAGATTTATCCTTAAATGTTCtcaaacaGACAATAAGCGATCCAAATTGGACTGGAGTTCCGCTTGACGTTGAAAGTGAATACGAATGCGTCGACAAAAATCATGTAATGGGTCAGAGTCATTTTGAATGTTCCCGTTGTGGATGGATTGAAGATGAGATTTGGCAAAGACATGAAGCTTTTGGAAGTAATTATGAACATCACACATATCAGTGCAGTGCTTGTGGTCAATCCTATACTTGGATGCACAATTTGAAACGTCATCAATTAAAATGCGGTAACGACAAAGAGGCTAAATATCAATGTCACATGTGTcgtaaaaaattcttcagaTCTGATTATCTGAAAATTCATCTGAGAAatcCATTTGCGTATGTTGATGTTGCGCATAGAATCATTGAGAGATTACAGCATCCACGTCGTCGTCGGGGAACGTATACACCACCAGAACAAcggcattttttttgttccgcGTGTGGCAATGGCTATAAATGGAAAATCAGTTTGAAAAGACATCAACGTCTTGAGTGTGCTAAGCAACCAAAGTATTCTTGCAACATATgttttatgtttaataatgTTCAGCAACAACCTCAGGAACAGCAGTATCATCAACAAAAACCGCAGGAATTACAACAACAACTGCATTATCAACAACATCAGCAACAAAATGCaccatttttatatatgaataCACCACTTGCACCTAGTCAGTCGGTTcagaaaaattcttcatcaACGTGGAAAATTCTTCCAAAACCAGCAAACTCAATGGGTTTGACGACTGTTCTTGTACCTTCAGTTAATGGTGGACAGCCGAAAATAGCTTATGTCAATATGccgaaaaacatttttgaacaaaTGTATCGCAATCAGCAATCACCATTAATGAAAGTAAATCtttgtgaaaaatatattcGTTTCAAGAAATTTTGGAGTTATGAGGAGAACaagagaaatgaaaatgaacaAACTCGTAGGCGATTTAGAAAATATCATGGGATTCCTATTACGTGTTCACGATGCAATAAACGATTCTCAAGAATTGACAGTTTAAGAAGACATATAAAACACGCGTgtTTCGAAAACGCGGACGAATACAGCGCATTGTGgatgttagaaaaaaatacacaaaatctCGAATTGAGTTCTCAATTTAGACCTGGTCTGCGAAAATCGTATCGTTGGAAACTAACTGGTTTGGAGTCAAATGTAGCGACAACATTTTCACAGGATGATGGAAAATTGTTACGTGCACAAGTGTCGGAATATATTTGTTCTGACTGtggtaaaaaatacaaatggcTAGACAGTTTGAAAAGGCATCAACGAGTTGAATGTGGCAATAAgcagaaaaaattctcttgcCACATGTGTGGtaggaaatttaaatatcgatATGAAATGCGCAATCATTTGTCCCTGCATCACGatcaAACAACTTCGTCGAATTGGGCAATTGATAAGTTCTATCAATATCAAACCATGTATTTTCAAATGATGGCTAAAAATCAAAGAACAGAGGCTGTTATTTCCGGAATGTTTAAAGATCAAATTAAAGATGAATTTGAGGAAAAGGGACAACAACAcaacagtaaaataaattcagagcaacaaaaattaaaaaatcctgTATCACGTTCTTGTGGTTATATGGGTTATTCTTGTCCCCGTTGCGGTAATACTTATACCAGAACACATTCTCTAAATAGACATGTTAATTTTGAATGTGGTATTGAGCCGAAATTTCAGTGTCCCATTTGtcagaaaaaatcaaaacacaAACACAATCTTTTGATTCACATGCGAACGCACAAGaaacaataa
Protein Sequence: MLFDFGILQSILTQRTGNFREEEEQSWSTNSEEEHYFPYELSSPNQTEYQNLPKTSKPFRCPICTRRFDGNLTWSETECLNNNPHQGHEEEWMPPNQDPGISKTSNYVPNTFTCDLCDFENFELFSDWNFPAGALEPLTEVLTGDEEDENCFECSRCNKAYKTLKSLRRHRFHCGRTFDPLVRGFVQNYDENDDQAQFQCVYCNRAYRWKKGLKRHQQRCEIKMAQEVSSGNNREVDIIEESNDGHIEEPEVDITGDDDEEIDIIDNTTPRDDSQSTVDQIANQSRKSTSVVIRNRDATVGRFQCILCGKKYGWLKNLRRHQRICRKKANKHRWKECKVMIEPLTLKSSKRIAEQNFKCANCFEQFKWLRDLRQHQSNCMKKAQNLWNVSEANKSSKNPPNFQERQGHSREISNHTDQDPCYKCAFCLKEYKWRRSLRRHYPKCTERGDLSLNVLKQTISDPNWTGVPLDVESEYECVDKNHVMGQSHFECSRCGWIEDEIWQRHEAFGSNYEHHTYQCSACGQSYTWMHNLKRHQLKCGNDKEAKYQCHMCRKKFFRSDYLKIHLRNPFAYVDVAHRIIERLQHPRRRRGTYTPPEQRHFFCSACGNGYKWKISLKRHQRLECAKQPKYSCNICFMFNNVQQQPQEQQYHQQKPQELQQQLHYQQHQQQNAPFLYMNTPLAPSQSVQKNSSSTWKILPKPANSMGLTTVLVPSVNGGQPKIAYVNMPKNIFEQMYRNQQSPLMKVNLCEKYIRFKKFWSYEENKRNENEQTRRRFRKYHGIPITCSRCNKRFSRIDSLRRHIKHACFENADEYSALWMLEKNTQNLELSSQFRPGLRKSYRWKLTGLESNVATTFSQDDGKLLRAQVSEYICSDCGKKYKWLDSLKRHQRVECGNKQKKFSCHMCGRKFKYRYEMRNHLSLHHDQTTSSNWAIDKFYQYQTMYFQMMAKNQRTEAVISGMFKDQIKDEFEEKGQQHNSKINSEQQKLKNPVSRSCGYMGYSCPRCGNTYTRTHSLNRHVNFECGIEPKFQCPICQKKSKHKHNLLIHMRTHKKQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -