Lcla007595.1
Basic Information
- Insect
- Leptopilina clavipes
- Gene Symbol
- -
- Assembly
- GCA_001855655.1
- Location
- JUFY01034462.1:244217-248470[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0062 0.64 11.1 1.0 1 21 102 123 102 124 0.94 2 18 0.15 16 6.8 1.5 1 23 132 155 132 155 0.92 3 18 0.0048 0.5 11.5 1.6 1 21 235 256 235 257 0.96 4 18 0.00098 0.1 13.6 0.1 3 22 316 336 314 336 0.94 5 18 0.33 34 5.7 1.2 2 23 345 367 344 367 0.93 6 18 0.0032 0.33 12.0 0.8 2 20 418 436 417 438 0.94 7 18 0.8 83 4.5 3.0 1 22 446 467 446 469 0.81 8 18 0.0099 1 10.5 0.5 2 21 533 553 532 554 0.93 9 18 0.0016 0.17 13.0 2.4 1 23 570 593 570 593 0.96 10 18 0.017 1.8 9.7 1.9 1 21 654 675 654 676 0.96 11 18 6 6.2e+02 1.7 0.5 1 8 684 691 684 694 0.90 12 18 0.0067 0.69 11.0 0.5 2 21 742 762 741 763 0.92 13 18 0.0092 0.95 10.6 5.9 1 23 771 794 771 794 0.97 14 18 0.0011 0.11 13.5 0.7 2 22 875 896 874 896 0.93 15 18 0.0027 0.28 12.2 2.6 2 23 905 927 904 927 0.95 16 18 0.00021 0.022 15.8 0.4 1 20 1022 1042 1022 1043 0.96 17 18 0.0016 0.17 13.0 1.0 1 21 1170 1191 1170 1192 0.96 18 18 0.0064 0.66 11.1 0.7 1 23 1199 1222 1199 1222 0.97
Sequence Information
- Coding Sequence
- atgagaagaatttttttacttcaaattcaaattgaagaatttaattcaataaatcaaatttttgGCTATGGCCAGTACATGTTTGTGGGTGAAGGAGAGCAAGCTGAAATTGTATGGGAGAGCATCAATATATCCGATGAAAATATGGAAAGcattgttaataattgtaatcAAGTTAAGCAACAAGGAAGAACAGAGAAAAagattagaaaatttgaaccGTCTGCAAGACATGCtcaagttaaatatttaacacgaTCACGTTTTCGAATTCCAGAAAAACCAACCagcaataaaacaattttcgacTGTCCCAACAATTGCGGAAGTTCCTTTTTCCAGAAATTTACATTGGAGAGACATTTGAAGTTTACTTGTGGTCAGCCACTGCGTTATCGGTGTCCCTATTGCGACATGTCATCCAGAATTCGAAACTGTATTAACATTCATTTAAAAGCACGCCACCCGGGTTTGAGAAATTACGTGATTGATATTTCAACTACTAAAACTGAAACACAATTTGAAGAAGATTTTAATTCACCGCATATTATACAGAAAGTAGAGCCTATTTGGAACGAGGagcaggaaataaaaattttaaatgtctcCAGTCTGGCGACATTAGACGTTAAACATGAGTATGATACTCCGGAAGATGATGATAATTCTTTTGACAAACAATTAATGAGAGCACAAAAACGTTACGTTTGTCCCAACAATTGTGGTAATTCATACAAGCACGAGCATACTTTAAAGGTTCATTTGAAATTCGGGTGCAATAGAAATGATCAGcataatttccatttggaTGATGATGAATCAGATTCAGAATATGATGTTTCTACAAATGATGTTTTAAAGGTAAAGAGTGCGAACGAGTTATTGAATCCAATGGCAATTAGCGAACTGGAAAATTACGAGCAAAATTCCGAAGGTAAATGGATATGTCCAAACAATTGCGGAGGAACATTCAGTAGTCGAGGTAATCTCAAATATCATCTGAAAACCAACTGCGGAATAAATCCAAAATTAGAGTGTCCCTATTGTTTTCATCGAACAAAACAACCATCTAATGGATTTATTCACGTGAGGAATTCACATCCCGGGTCTGAAATTTGCTTGGTTCATGTTGATACTGGTGAAGTTTTGAAAAGCAAAAAGGAAGCTCGTCAAAGTACCAGTTTGGATCTGATTAATGGTTTGCCTTCACTTTACGTAGATAGAAGTAAATCCTCGGGCAAATCTGCAACTACTTGTCACAGCTGTGGAAAGGAATTTAAATCAGAACGCACTTTAGGTAGACATCTTTATGAAGGTTGTGGTTATCCACCTCGTTTTAAATGTCCTTATTGCGATTATCAAGTTAGACGATTATCTTACGCTTTCTTCCATGTGTCGAAGCATCATCCAGGCTGCGAGGTTTATATGGTGGATTTAGTCACCGGTGACAGTATTACTGACCCTGCTCAGATTAAGAAAGAAGCCATCGCCGACATTGCCGAGGATCGGAAACCAATTCCAGTTGATCCAGTATTAGTTTTACAACCCAAGAAAATTGTCAAACCACATCCGGCGGGACTTCAAAAGAAAAGACTCGTATGTCCAATTGGCTGTGGTcgattcttcttctttagaGCCAGTCTCGAAAAGCACAAAAAGCACTGTGCGAGAAATCGCAAACTTTCAAAACGTTCAACCACAGGTCGTTACAAGTGTCCCTATTGCGTGAATCGTTACGAACATACCTCCAGTCTCTTTAGACACATTAAAGCCAGTCATCCaacaaagaagaaatataCCATTGACACCCACCAGGAGGAAATCGTACCCGAGAATGTTGATTCACCGATAATTCCCAAGAAGGAGGTATTGCCGAAAGGTAAAAAACTGCCGAAACAATCCGAAGATTTGGATGAGAAGACTGATGATAACGTAGAGAATAAGAATCTTCCGAAAATATTTGTATGTCCTAACAAATGTGGAAGTAGCTTTGAACATTTCTGCAATATTCAGCGGCACATTCGTTTGAATTGTGCAAAAGCACGTCGATACAAATGTCCGCAATGTAATTATCGAGCTCAAAAGTTCCCCGTGGTCTTTAATGAACAGAGACACAGACCTAGTAAAAAACGCAATGTAAAATCAAAGACTGAAGATAATGAATCCGTCGAGGCACAATTGCCAAAAACGACTGCCAAGAAAAAGATAATACACAAGAATTTTCTATGTCCAAATGATTGTGGACGCTCCTTTTATTCAGAACGTTCTGTTACAATGCACTTGCGACACATTTGTGGAAAAGCTCCTCGTTTCAAGTGTCCCTATTGTCCACAACTTTGTCGTCATCAAGGCAATATGACGATTCACATAAAACACCGTCATGCCGGTAAAAAGAATTACATGATTGACCttacgaagaaaaaaaaatcaacaagcACTAAATTAAAGGAGAAAACTGATATTAATGACACAAAGGAATTGTTGTTACCAGTAAAGGTAATTAAACAAGAAACAGAAACTTTCGAAGAGAAGAAACCTAAGAATGTTTCCCAATTGACAATATTTGGGAGCActacgaaaagaaaaattccaagACTATTTAATTGTAGTAAACGAAGACTGATGTGTCCGCACAAATGTGGTCGTTATTTTTCCTCACGTGTGAAATTGCAATTACACATGAGCACCGTTTGCAAAAATCCAGTGAGTACCAAATGCCCCTATTGCCCTAAGGTGTGCAAATATGCATGGAACATTGATAGGCACATTAAGCATTATCATTCCGATTCTTCAGATAAAAAACTTCTCaaagaagaaattgatttaaaaaatcaaaaagttgAAGATGAACAGGAAGAAGAGGTAGAAATTAAGTTAACCGACAATATAGAAGATGATAGTCCACAAGATTTGGAGCaaaaatttgatgataaaACTGAAGATGTCGAGATGAAATCCGTTACGGAAAATCAAGTCGAAAGTACACAAGATAAAATGGATACATCTGATGATAATGTTCCTCTAAGTAGCAGTAGTCCAGAATCAACTAGTCCAATGAAGAAATTTGTTTGTCCGAACAAATGCGGTAAATCTTATCCAAAAGAAAGCAGTTTAAAGAACCACTTGTTCTTCACTTGCCAAAAGCCGGCACGTTTTGCTTGCCCCTACTGTCAAAGTTGTTCGAAAGTCACTTCAAATGGTTACGTACACGTGAAGAGAATGCATCCCGATCGTAAAGTTTATCTCATTGACAttgagacaaataaaattgttcgTAGTTCAAAACATAAGTCACtggatttaaataatagtgaTGAGttggaaaatagtaaaattctcgACACAGAAGATGATGATGGGGATGAAAGTATGGAAATTGTGAATGATTCTAATGTTGATATTGATGTCGATGAGCCTGATGAGCCAGATGAGCCGATTTTGGGTGCCGATGAGGAATTCACAAATGATCCTGTTGTTTCTGAACAATCAGATAAGAAGGAGGAAGTTTTTGTTTGTCCCAATAATTGTGGCAGTTCTTTTACTCATGagcataaattaaataatcatgTTCGTGATCAATGTGGACCTCCACGTTATAAATGTccttattgtttttttatcacaAGAGAGCCTTCAAATGTCTACGctcacattaaaaataaacatccTGATGAGAGGATCTACATGATTGACACTGACATGAATCAAAGCTGCAATGAGCCAGACTCACCTAGAGGCAATGAAGACAATTAG
- Protein Sequence
- MRRIFLLQIQIEEFNSINQIFGYGQYMFVGEGEQAEIVWESINISDENMESIVNNCNQVKQQGRTEKKIRKFEPSARHAQVKYLTRSRFRIPEKPTSNKTIFDCPNNCGSSFFQKFTLERHLKFTCGQPLRYRCPYCDMSSRIRNCINIHLKARHPGLRNYVIDISTTKTETQFEEDFNSPHIIQKVEPIWNEEQEIKILNVSSLATLDVKHEYDTPEDDDNSFDKQLMRAQKRYVCPNNCGNSYKHEHTLKVHLKFGCNRNDQHNFHLDDDESDSEYDVSTNDVLKVKSANELLNPMAISELENYEQNSEGKWICPNNCGGTFSSRGNLKYHLKTNCGINPKLECPYCFHRTKQPSNGFIHVRNSHPGSEICLVHVDTGEVLKSKKEARQSTSLDLINGLPSLYVDRSKSSGKSATTCHSCGKEFKSERTLGRHLYEGCGYPPRFKCPYCDYQVRRLSYAFFHVSKHHPGCEVYMVDLVTGDSITDPAQIKKEAIADIAEDRKPIPVDPVLVLQPKKIVKPHPAGLQKKRLVCPIGCGRFFFFRASLEKHKKHCARNRKLSKRSTTGRYKCPYCVNRYEHTSSLFRHIKASHPTKKKYTIDTHQEEIVPENVDSPIIPKKEVLPKGKKLPKQSEDLDEKTDDNVENKNLPKIFVCPNKCGSSFEHFCNIQRHIRLNCAKARRYKCPQCNYRAQKFPVVFNEQRHRPSKKRNVKSKTEDNESVEAQLPKTTAKKKIIHKNFLCPNDCGRSFYSERSVTMHLRHICGKAPRFKCPYCPQLCRHQGNMTIHIKHRHAGKKNYMIDLTKKKKSTSTKLKEKTDINDTKELLLPVKVIKQETETFEEKKPKNVSQLTIFGSTTKRKIPRLFNCSKRRLMCPHKCGRYFSSRVKLQLHMSTVCKNPVSTKCPYCPKVCKYAWNIDRHIKHYHSDSSDKKLLKEEIDLKNQKVEDEQEEEVEIKLTDNIEDDSPQDLEQKFDDKTEDVEMKSVTENQVESTQDKMDTSDDNVPLSSSSPESTSPMKKFVCPNKCGKSYPKESSLKNHLFFTCQKPARFACPYCQSCSKVTSNGYVHVKRMHPDRKVYLIDIETNKIVRSSKHKSLDLNNSDELENSKILDTEDDDGDESMEIVNDSNVDIDVDEPDEPDEPILGADEEFTNDPVVSEQSDKKEEVFVCPNNCGSSFTHEHKLNNHVRDQCGPPRYKCPYCFFITREPSNVYAHIKNKHPDERIYMIDTDMNQSCNEPDSPRGNEDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -